Evidence map›Paper›PMID 20419498›Full record

ArticleJournal of molecular modeling2011

Homology modeling, molecular dynamic simulation and docking studies of cyclin dependent kinase 1.

Lei Zhang, Huawei Zhu, Qiang Wang, Hao Fang, Wenfang Xu, Minyong Li

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of molecular modeling, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lei ZhangDepartment of Medicinal Chemistry, School of Pharmacy, Shandong University, Jinan, Shandong, China.
Huawei Zhu
Qiang Wang
Hao Fang
Wenfang Xu
Minyong Li

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In order to develop promising cyclin dependent kinase 1 inhibitors, homology modeling, docking and molecular dynamic simulation techniques were applied to get insight into the functional and structural properties of cyclin dependent kinase 1 (CDK1). Since there is no reported CDK1 crystal structural data, the three dimensional structure of CDK1 was constructed based on homology modeling. An extensive dynamic simulation was also performed on a Flavopiridol-CDK1 complex for probing the binding pattern of Flavopiridol in the active site of CDK1. The binding modes of other inhibitors to CDK1 were also proposed by molecular docking. The structural requirement for developing more potent CDK1 inhibitors was obtained by the above-mentioned molecular simulations and pharmacophore modeling.

Indexed as

Computer SimulationMolecular Dynamics SimulationAmino Acid SequenceBinding SitesCatalytic DomainCDC2 Protein KinaseFlavonoidsModels, ChemicalModels, MolecularPiperidinesProtein BindingProtein Kinase InhibitorsSequence AlignmentSequence Homology, Amino AcidalvocidibCDC2 Protein KinaseFlavonoidsPiperidinesProtein Kinase Inhibitors

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.