Evidence map›Paper›PMID 20418888›Full record

ArticleNature genetics2010

Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.

Thorgeir E Thorgeirsson, Daniel F Gudbjartsson, Ida Surakka, Jacqueline M Vink, Najaf Amin, Frank Geller, Patrick Sulem, Thorunn Rafnar, Tõnu Esko, Stefan Walter and 85 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 452 papers, 22 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
452citing papers in PubMed, 22 pooled it
45.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

452 citing papers in PubMed, 22 syntheses or guidelines pooled it, 692 citations in OpenAlex.

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  14. A Genetic Epidemiological Mega Analysis of Smoking Initiation in Adolescents.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2017
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  18. Deep Sequencing of Three Loci Implicated in Large-Scale Genome-Wide Association Study Smoking Meta-Analyses.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2016
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392 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

95 authors at 20 institutions in 11 countries.

Thorgeir E Thorgeirsson[1] deCODE Genetics, Reykjavik, Iceland. [2] Center for Biomolecular Science and Engineering, Jack Baskin School of Engineering, University of California, Santa Cruz, California, USA.
Daniel F Gudbjartsson
Ida Surakka
Jacqueline M Vink
Najaf Amin
Frank Geller
Patrick Sulem
Thorunn Rafnar
Tõnu Esko
Stefan Walter
Christian Gieger
Rajesh Rawal
Massimo Mangino
Inga Prokopenko
Reedik Mägi
Kaisu Keskitalo
Iris H Gudjonsdottir
Solveig Gretarsdottir
Hreinn Stefansson
John R Thompson
Yurii S Aulchenko
Mari Nelis
Katja K Aben
Martin den Heijer
Asger Dirksen
Haseem Ashraf
Nicole Soranzo
Ana M Valdes
Claire Steves
André G Uitterlinden
Albert Hofman
Anke Tönjes
Peter Kovacs
Jouke Jan Hottenga
Gonneke Willemsen
Nicole Vogelzangs
Angela Döring
Norbert Dahmen
Barbara Nitz
Michele L Pergadia
Berta Saez
Veronica De Diego
Victoria Lezcano
Maria D Garcia-Prats
Samuli Ripatti
Markus Perola
Johannes Kettunen
Anna-Liisa Hartikainen
Anneli Pouta
Jaana Laitinen
Matti Isohanni
Shen Huei-Yi
Maxine Allen
Maria Krestyaninova
Alistair S Hall
Gregory T Jones
Andre M van Rij
Thomas Mueller
Benjamin Dieplinger
Meinhard Haltmayer
Steinn Jonsson
Stefan E Matthiasson
Hogni Oskarsson
Thorarinn Tyrfingsson
Lambertus A Kiemeney
Jose I Mayordomo
Jes S Lindholt
Jesper Holst Pedersen
Wilbur A Franklin
Holly Wolf
Grant W Montgomery
Andrew C Heath
Nicholas G Martin
Pamela A F Madden
Ina Giegling
Dan Rujescu
Marjo-Riitta Järvelin
Veikko Salomaa
Michael Stumvoll
Tim D Spector
H-Erich Wichmann
Andres Metspalu
Nilesh J Samani
Brenda W Penninx
Ben A Oostra
Dorret I Boomsma
Henning Tiemeier
Cornelia M van Duijn
Jaakko Kaprio
Jeffrey R Gulcher
ENGAGE Consortium
Mark I McCarthy
Leena Peltonen
Unnur Thorsteinsdottir
Kari Stefansson
deCODE Genetics (Iceland) · ISErasmus MC · NLUniversity of Helsinki · FIFinnish Institute for Health and Welfare · FIHelmholtz Zentrum München · DEVrije Universiteit Amsterdam · NLConvent Hospital of the Brothers of Saint John of God · ATOxford Centre for Diabetes, Endocrinology and Metabolism · GBUniversity of Tartu · EEWashington University in St. Louis · USAmsterdam UMC Location VUmc · NLGentofte Hospital · DKHospital San Pedro · ESKing's College London · GBLeipzig University · DELudwig-Maximilians-Universität München · DEQIMR Berghofer Medical Research Institute · AURadboud University Medical Center · NLSt Thomas' Hospital · GBUniversity of Colorado Denver · US

Funding

Genes contributing to nicotine dependence in humansR01DA017932 · NIDA · DECODE GENETICS, INC. · PI STEFANSSON, KARI · 2005 to 2015
$9.6M
NIDA NIH HHS R01 DA 017932NIDA NIH HHS R01 DA017932Wellcome Trust 072856Wellcome Trust 079771Wellcome Trust 089061
6 · The paper itself

Abstract

Smoking is a common risk factor for many diseases. We conducted genome-wide association meta-analyses for the number of cigarettes smoked per day (CPD) in smokers (n = 31,266) and smoking initiation (n = 46,481) using samples from the ENGAGE Consortium. In a second stage, we tested selected SNPs with in silico replication in the Tobacco and Genetics (TAG) and Glaxo Smith Kline (Ox-GSK) consortia cohorts (n = 45,691 smokers) and assessed some of those in a third sample of European ancestry (n = 9,040). Variants in three genomic regions associated with CPD (P < 5 x 10(-8)), including previously identified SNPs at 15q25 represented by rs1051730[A] (effect size = 0.80 CPD, P = 2.4 x 10(-69)), and SNPs at 19q13 and 8p11, represented by rs4105144[C] (effect size = 0.39 CPD, P = 2.2 x 10(-12)) and rs6474412-T (effect size = 0.29 CPD, P = 1.4 x 10(-8)), respectively. Among the genes at the two newly associated loci are genes encoding nicotine-metabolizing enzymes (CYP2A6 and CYP2B6) and nicotinic acetylcholine receptor subunits (CHRNB3 and CHRNA6), all of which have been highlighted in previous studies of smoking and nicotine dependence. Nominal associations with lung cancer were observed at both 8p11 (rs6474412[T], odds ratio (OR) = 1.09, P = 0.04) and 19q13 (rs4105144[C], OR = 1.12, P = 0.0006).

Indexed as

Genetic VariationAllelesAryl Hydrocarbon HydroxylasesCohort StudiesCytochrome P-450 CYP2A6FemaleGenome-Wide Association StudyGenomicsHumansLung NeoplasmsMaleOdds RatioPhenotypeReceptors, NicotinicSmokingTobacco Use DisorderAryl Hydrocarbon HydroxylasesCHRNA6 protein, humanCHRNB3 protein, humanCYP2A6 protein, humanCytochrome P-450 CYP2A6Receptors, Nicotinic

Identifiers

PMID20418888
PMCPMC3080600
OpenAlexW2103465143

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.