Evidence map›Paper›PMID 20418883›Full record

ArticleNature structural & molecular biology2010

Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells.

Zarmik Moqtaderi, Jie Wang, Debasish Raha, Robert J White, Michael Snyder, Zhiping Weng, Kevin Struhl

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 156 papers.

0numbers the graph read from it
0cells of the map it votes in
156citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

156 citing papers in PubMed, 236 citations in OpenAlex.

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96 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Zarmik MoqtaderiDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts, USA.
Jie Wang
Debasish Raha
Robert J White
Michael Snyder
Zhiping Weng
Kevin Struhl
Harvard University · USUniversity of Massachusetts Chan Medical School · USCancer Research UK Scotland Institute · GBStanford University · USYale University · US

Funding

Production Center for Global Mapping of Regulatory ElementsU54HG004558 · NHGRI · YALE UNIVERSITY · PI SNYDER, MICHAEL P. · 2007 to 2011
$15.4M
MOLECULAR MECHANISMS OF YEAST TRANSCRIPTIONAL INITIATIONR01GM030186 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI STRUHL, KEVIN · 1985 to 2018
$13.6M
EDAC: ENCODE Data Analysis CenterU01HG004695 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI BIRNEY, EWAN · 2008 to 2012
$6.4M
MECHANISMS OF YEAST TRANSCRIPTIONAL INITITATIONR37GM030186 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI STRUHL, KEVIN · 1993 to 2002
$2.1M
Alternative Promoter Usage in Tissue-specific Gene Expr*R01HG003110 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WENG, ZHIPING · 2003 to 2006
$1.9M
NHGRI NIH HHS HG 4558NHGRI NIH HHS HG 4695NHGRI NIH HHS R01 HG003110NHGRI NIH HHS U01 HG004695NHGRI NIH HHS U54 HG004558NIGMS NIH HHS GM 30186NIGMS NIH HHS R01 GM030186NIGMS NIH HHS R37 GM030186
6 · The paper itself

Abstract

Genome-wide occupancy profiles of five components of the RNA polymerase III (Pol III) machinery in human cells identified the expected tRNA and noncoding RNA targets and revealed many additional Pol III-associated loci, mostly near short interspersed elements (SINEs). Several genes are targets of an alternative transcription factor IIIB (TFIIIB) containing Brf2 instead of Brf1 and have extremely low levels of TFIIIC. Strikingly, expressed Pol III genes, unlike nonexpressed Pol III genes, are situated in regions with a pattern of histone modifications associated with functional Pol II promoters. TFIIIC alone associates with numerous ETC loci, via the B box or a novel motif. ETCs are often near CTCF binding sites, suggesting a potential role in chromosome organization. Our results suggest that human Pol III complexes associate preferentially with regions near functional Pol II promoters and that TFIIIC-mediated recruitment of TFIIIB is regulated in a locus-specific manner.

Indexed as

Base SequenceCell LineDNA Polymerase IIGenetic LociGenome, HumanHumansPromoter Regions, GeneticRNA Polymerase IIITATA-Binding Protein Associated FactorsTranscription FactorsTranscription Factors, TFIIITranscription Factor TFIIIBTranscription Factor TFIIICBRF1 protein, humanBRF2 protein, humanDNA Polymerase IIRNA Polymerase IIITATA-Binding Protein Associated FactorsTranscription FactorsTranscription Factors, TFIIITranscription Factor TFIIIBTranscription Factor TFIIIC

Identifiers

PMID20418883
PMCPMC3350333
OpenAlexW2060262242

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.