ArticleApplied and environmental microbiology2010
Comparative transcriptomic and proteomic profiling of industrial wine yeast strains.
Article in Applied and environmental microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed, 44 citations in OpenAlex.
- The multiple roles of lipid metabolism in yeast physiology during beer fermentation.Genetics and molecular biology · 2022Article
- FLO11, a Developmental Gene Conferring Impressive Adaptive Plasticity to the YeastPathogens (Basel, Switzerland) · 2021Review
- Effect of Unsaturated Fatty Acids on Intra-Metabolites and Aroma Compounds ofFoods (Basel, Switzerland) · 2021Article
- Comparative transcriptional analysis of flavour-biosynthetic genes of a nativeJournal of biological research (Thessalonike, Greece) · 2019Article
- Transcriptional Comparison Investigating the Influence of the Addition of Unsaturated Fatty Acids on Aroma Compounds During Alcoholic Fermentation.Frontiers in microbiology · 2019Article
- Integrating transcriptomics and metabolomics for the analysis of the aroma profiles of Saccharomyces cerevisiae strains from diverse origins.BMC genomics · 2017Article
- Physiological Response of Escherichia coli O157:H7 Sakai to Dynamic Changes in Temperature and Water Activity as Experienced during Carcass Chilling.Molecular & cellular proteomics : MCP · 2016Article
- Proteomic Analysis of Hylocereus polyrhizus Reveals Metabolic Pathway Changes.International journal of molecular sciences · 2016Article
- Metabolic engineering of yeast to produce fatty acid-derived biofuels: bottlenecks and solutions.Frontiers in microbiology · 2015Review
- Article
- Adjustment of trehalose metabolism in wine Saccharomyces cerevisiae strains to modify ethanol yields.Applied and environmental microbiology · 2013Article
- Cadmium-induced proteome remodeling regulated by Spc1/Sty1 and Zip1 in fission yeast.Toxicological sciences : an official journal of the Society of Toxicology · 2012Article
- Genome-wide analytical approaches for reverse metabolic engineering of industrially relevant phenotypes in yeast.FEMS yeast research · 2012Review
- The genetic basis of natural variation in oenological traits in Saccharomyces cerevisiae.PloS one · 2012Article
- Transcriptional regulation and the diversification of metabolism in wine yeast strains.Genetics · 2012Article
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The geno- and phenotypic diversity of commercial Saccharomyces cerevisiae wine yeast strains provides an opportunity to apply the system-wide approaches that are reasonably well established for laboratory strains to generate insight into the functioning of complex cellular networks in industrial environments. We have previously analyzed the transcriptomes of five industrial wine yeast strains at three time points during alcoholic fermentation. Here, we extend the comparative approach to include an isobaric tag for relative and absolute quantitation (iTRAQ)-based proteomic analysis of two of the previously analyzed wine yeast strains at the same three time points during fermentation in synthetic wine must. The data show that differences in the transcriptomes of the two strains at a given time point rather accurately reflect differences in the corresponding proteomes independently of the gene ontology (GO) category, providing strong support for the biological relevance of comparative transcriptomic data sets in yeast. In line with previous observations, the alignment proves to be less accurate when assessing intrastrain changes at different time points. In this case, differences between the transcriptome and proteome appear to be strongly dependent on the GO category of the corresponding genes. The data in particular suggest that metabolic enzymes and the corresponding genes appear to be strongly correlated over time and between strains, suggesting a strong transcriptional control of such enzymes. The data also allow the generation of hypotheses regarding the molecular origin of significant differences in phenotypic traits between the two strains.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.