Evidence map›Paper›PMID 20417106›Full record

ArticleCurrent biology : CB2010

Proteolytic instability and the action of nonclassical transcriptional activators.

Xin Wang, Masafumi Muratani, William P Tansey, Mark Ptashne

Abstract read
In one paragraph

Article in Current biology : CB, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. The chemistry of regulation of genes and other things.The Journal of biological chemistry · 2014
    Review
  8. Review
  9. Article
  10. Regulation of gene expression by the ubiquitin-proteasome system.Seminars in cell & developmental biology · 2012
    Review
  11. Article
  12. Ubiquitin and proteasomes in transcription.Annual review of biochemistry · 2012
    Review
  13. Review
  14. Review
  15. An effect of DNA sequence on nucleosome occupancy and removal.Nature structural & molecular biology · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xin WangMolecular Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10021, USA.
Masafumi Muratani
William P Tansey
Mark Ptashne

Funding

REGULATION OF THE GAL GENES IN YEASTR01GM032308 · NIGMS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI PTASHNE, MARK S · 1985 to 2009
$6.1M
Transcription Control By The Ubiquitin-Proteasome SystemR01GM067728 · NIGMS · VANDERBILT UNIVERSITY · PI TANSEY, WILLIAM PATRICK · 2003 to 2015
$4.6M
NIGMS NIH HHS GM067728NIGMS NIH HHS GM32308NIGMS NIH HHS R01 GM032308NIGMS NIH HHS R01 GM067728
6 · The paper itself

Abstract

Several transcriptional activators, called "classical" because each bears a natural acidic activating region attached to a DNA binding domain, are proteolytically unstable in yeast, and it has been suggested that this instability is required for transcriptional activation. Here we test the generality of that proposal by examining a set of activators (called "nonclassical") that lack activating regions. These activators (e.g., LexA-Gal11) comprise a LexA DNA binding domain fused to a component of the Mediator and are believed to insert the latter into the Mediator and recruit it (and, indirectly, other components required for transcription) to a gene bearing LexA sites. We find that three, and only three, Mediator subunits, all from its tail domain, work as activators when fused to LexA. All three are unstable, and for the case analyzed in detail, stabilization decreases activity. Thus, to the extent tested, both classical and nonclassical activators work most efficiently when proteolytically unstable.

Indexed as

Transcriptional Activationbeta-GalactosidaseBinding SitesCycloheximideMediator ComplexPolymerase Chain ReactionSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factorsbeta-GalactosidaseCycloheximideMED2 protein, S cerevisiaeMediator ComplexSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID20417106
PMCPMC3033761

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.