Evidence map›Paper›PMID 20416509›Full record

ArticleChemistry & biology2010

Utilization of an in vivo reporter for high throughput identification of branched small molecule regulators of hypoxic adaptation.

Natalya A Smirnova, Ilay Rakhman, Natalia Moroz, Manuela Basso, Jimmy Payappilly, Sergey Kazakov, Francisco Hernandez-Guzman, Irina N Gaisina, Alan P Kozikowski, Rajiv R Ratan and 1 more

Open access · greenAbstract read
In one paragraph

Article in Chemistry & biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 75 citations in OpenAlex.

  1. The cell-permeable iron chelator M606 inhibits MYCN-driven neuroblastoma via an E2F3-mediated response.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  14. Cognitive Enhancer Noopept Activates Transcription Factor HIF-1.Doklady. Biochemistry and biophysics · 2020
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Natalya A SmirnovaBurke Medical Research Institute, Department of Neurology and Neuroscience, Weill Medical College of Cornell University, 785 Mamaroneck Ave, White Plains, NY 10605, USA.
Ilay Rakhman
Natalia Moroz
Manuela Basso
Jimmy Payappilly
Sergey Kazakov
Francisco Hernandez-Guzman
Irina N Gaisina
Alan P Kozikowski
Rajiv R Ratan
Irina G Gazaryan
Cornell University · USUniversity of Illinois Chicago · USPace University · US

Funding

TRANSCRIPTIONAL RESPONSES TO MITOCHONDRIAL DYSFUNCTIONP01AG014930 · NIA · WINIFRED MASTERSON BURKE MED RES INST · PI GIBSON, GARY E · 1999 to 2020
$30.7M
HDAC6-Selective Inhibitors for Pancreatic Cancer TreatmentR43CA133985 · NCI · PSYCHOGENICS, INC. · PI TUECKMANTEL, WERNER · 2008 to 2010
$367k
NCI NIH HHS 1R43CA133985-01NCI NIH HHS R43 CA133985NIA NIH HHS P01 AG014930
6 · The paper itself

Abstract

Small molecules inhibiting hypoxia inducible factor (HIF) prolyl hydroxylases (PHDs) are the focus of drug development efforts directed toward the treatment of ischemia and metabolic imbalance. A cell-based reporter produced by fusing HIF-1 alpha oxygen degradable domain (ODD) to luciferase was shown to work as a capture assay monitoring stability of the overexpressed luciferase-labeled HIF PHD substrate under conditions more physiological than in vitro test tubes. High throughput screening identified novel catechol and oxyquinoline pharmacophores with a "branching motif" immediately adjacent to a Fe-binding motif that fits selectively into the HIF PHD active site in in silico models. In accord with their structure-activity relationship in the primary screen, the best "hits" stabilize HIF1 alpha, upregulate known HIF target genes in a human neuronal line, and exert neuroprotective effects in established model of oxidative stress in cortical neurons.

Indexed as

CatecholsCell Line, TumorDioxygenasesHigh-Throughput Screening AssaysHumansHydrazinesHypoxiaHypoxia-Inducible Factor 1Hypoxia-Inducible Factor-Proline DioxygenasesModels, MolecularNeuroprotective AgentsNuclear ProteinsOxidative StressOxyquinolineProcollagen-Proline DioxygenaseStructure-Activity RelationshipcatecholCatecholsDioxygenasesEGLN2 protein, humanHydrazinesHypoxia-Inducible Factor 1Hypoxia-Inducible Factor-Proline DioxygenasesNeuroprotective AgentsNuclear ProteinsOxyquinolineProcollagen-Proline DioxygenaseThiadiazoles

Identifiers

PMID20416509
PMCPMC4327942
OpenAlexW2062158131

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.