Evidence map›Paper›PMID 20416268›Full record

ArticleArchives of biochemistry and biophysics2010

Regulation of Metnase's TIR binding activity by its binding partner, Pso4.

Brian D Beck, Sung S Lee, Robert Hromas, Suk-Hee Lee

Abstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Ubiquitous overexpression of the DNA repair factorNPJ aging and mechanisms of disease · 2017
    Article
  6. Review
  7. Review
  8. Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Brian D BeckDepartment of Biochemistry & Molecular Biology, Indiana University School of Medicine, 980 W. Walnut Street, Indianapolis, IN 46202, USA.
Sung S Lee
Robert Hromas
Suk-Hee Lee
Walther Cancer Foundation · USUniversity of New Mexico · USIndiana University – Purdue University Indianapolis · US

Funding

Mechanism of DNA Damage Recognition in Higher EukaryotesR01CA092111 · NCI · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI LEE, SUK-HEE · 2001 to 2005
$1.3M
TRANSPOSASES IN ETOPOSIDE RESISTANCER01CA140422 · NCI · UNIVERSITY OF NEW MEXICO · PI HROMAS, ROBERT A · 2009 to 2012
$1.1M
NCI NIH HHS CA140422NCI NIH HHS CA92111NCI NIH HHS R01 CA092111NCI NIH HHS R01 CA140422NIDDK NIH HHS T32 DK0075-20
6 · The paper itself

Abstract

Metnase (also known as SETMAR) is a SET and transposase fusion protein in humans and plays a positive role in double-strand break (DSB) repair. While the SET domain possesses histone lysine methyltransferase activity, the transposase domain is responsible for 5'-terminal inverted repeat (TIR)-specific binding, DNA looping, and DNA cleavage activities. We recently demonstrated that human homolog of Pso4 (hPso4) is a Metnase binding partner that mediates Metnase binding to non-TIR DNA such as DNA damage sites. Here we show that Metnase functions as a dimer in its TIR binding. While both Metnase and hPso4 can independently interact with TIR DNA, Metnase's DNA binding activity is not required for formation of the Metnase-hPso4-DNA complex. A further stoichiometric analysis indicated that only one protein is involved in interaction with dsDNA when Metnase-hPso4 forms a stable complex. Interaction of the Metnase-hPso4 complex with TIR DNA was competitively inhibited by both TIR and non-TIR DNA, suggesting that hPso4 is solely responsible for binding to DNA in the Metnase-hPso4-DNA complex. Together, our study suggests that hPso4, once it forms a complex with Metnase, negatively regulates Metnase's TIR binding activity, which is perhaps necessary for Metnase localization at non-TIR sites such as DSBs.

Indexed as

Cell LineDNADNA Breaks, Double-StrandedDNA RepairDNA Repair EnzymesHistone-Lysine N-MethyltransferaseHumansInverted Repeat SequencesMultiprotein ComplexesNuclear ProteinsProtein BindingProtein MultimerizationProtein Structure, TertiaryRNA Splicing FactorsDNADNA Repair EnzymesHistone-Lysine N-MethyltransferaseMultiprotein ComplexesNuclear ProteinsPRPF19 protein, humanRNA Splicing FactorsSETMAR protein, human

Identifiers

PMID20416268
PMCPMC2880194
OpenAlexW2089468167

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.