Evidence map›Paper›PMID 20415538›Full record

ArticleThe Journal of infectious diseases2010

Human bocaviruses are highly diverse, dispersed, recombination prone, and prevalent in enteric infections.

Amit Kapoor, Peter Simmonds, Elizabeth Slikas, Linlin Li, Ladaporn Bodhidatta, Orntipa Sethabutr, Henda Triki, Olfa Bahri, Bamidele S Oderinde, Marycelin M Baba and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 200 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
200citing papers in PubMed, 2 pooled it
23.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

200 citing papers in PubMed, 2 syntheses or guidelines pooled it, 376 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Human bocavirus in the nasopharynx of otitis-prone children.International journal of pediatric otorhinolaryngology · 2012
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140 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 5 countries.

Amit KapoorBlood Systems Research Institute, and Department of Laboratory Medicine, University of California-San Francisco, 270 Masonic Ave., San Francisco, CA 94118, USA.
Peter Simmonds
Elizabeth Slikas
Linlin Li
Ladaporn Bodhidatta
Orntipa Sethabutr
Henda Triki
Olfa Bahri
Bamidele S Oderinde
Marycelin M Baba
David N Bukbuk
John Besser
Joanne Bartkus
Eric Delwart
Minnesota Department of Health · USArmed Forces Research Institute of Medical Science · THBlood Systems Research Institute · USInstitut Pasteur de Tunis · TNUniversity of California, San Francisco · USUniversity of Maiduguri · NGUniversity of Edinburgh · GB

Funding

Metagenomic analysis of the human viromeR01HL083254 · NHLBI · VITALANT · PI DELWART, ERIC L · 2007 to 2010
$1.6M
NHLBI NIH HHS R01 HL083254NHLBI NIH HHS R01HL083254
6 · The paper itself

Abstract

A new species of parvovirus, tentatively named human bocavirus 4 (HBoV4), was genetically characterized. Among 641 feces samples obtained from children and adults, the most commonly detected bocavirus species were, in descending order, HBoV2, HBoV3, HBoV4, and HBoV1, with an HBoV2 prevalence of 21% and 26% in Nigerian and Tunisian children, respectively. HBoV3 or HBoV4 species were found in 12 of 192 patients with non-polio acute flaccid paralysis in Tunisia and Nigeria and 0 of 96 healthy Tunisian contacts (P = .01). Evidence of extensive recombination at the NP1 and VP1 gene boundary between and within bocavirus species was found. The high degree of genetic diversity seen among the human bocaviruses found in feces specimens, relative to the highly homogeneous HBoV1, suggest that this worldwide-distributed respiratory pathogen may have recently evolved from an enteric bocavirus after acquiring an expanded tropism favoring the respiratory tract. Elucidating the possible role of the newly identified enteric bocaviruses in human diseases, including acute flaccid paralysis and diarrhea, will require further epidemiological studies.

Indexed as

Genetic VariationRecombination, GeneticAdolescentAdultChildChild, PreschoolFecesGastroenteritisGenotypeHuman bocavirusHumansInfantMolecular Sequence DataNigeriaParvoviridae InfectionsPhylogenyViral Proteins

Identifiers

PMID20415538
PMCPMC2902747
OpenAlexW2156993450

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.