Evidence map›Paper›PMID 20410349›Full record

ArticleJournal of clinical microbiology2010

Impact of Pseudomonas aeruginosa genomic instability on the application of typing methods for chronic cystic fibrosis infections.

Joanne L Fothergill, Judith White, Juliet E Foweraker, Martin J Walshaw, Martin J Ledson, Eshwar Mahenthiralingam, Craig Winstanley

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Genomics of antibiotic-resistance prediction in Pseudomonas aeruginosa.Annals of the New York Academy of Sciences · 2019
    Review
  3. Review
  4. Article
  5. Persistence and Microevolution ofFrontiers in microbiology · 2018
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Comparison of three typing methods for Pseudomonas aeruginosa isolates from patients with cystic fibrosis.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2012
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Joanne L FothergillDivision of Medical Microbiology, University of Liverpool, Duncan Building, Daulby Street, Liverpool L69 3GA, United Kingdom.
Judith White
Juliet E Foweraker
Martin J Walshaw
Martin J Ledson
Eshwar Mahenthiralingam
Craig Winstanley

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Liverpool epidemic strain (LES) of Pseudomonas aeruginosa is widespread among cystic fibrosis (CF) patients in the United Kingdom and has emerged recently in North America. In this study, we report the analysis of 24 "anomalous" CF isolates of P. aeruginosa that produced inconsistent results with regard to either pulsed-field gel electrophoresis (PFGE) or PCR tests for the LES. We used a new typing method, the ArrayTube genotyping system, to determine that of the 24 anomalous isolates tested, 13 were confirmed as the LES. LES isolates could not be clearly distinguished from non-LES isolates by two other commonly used genetic fingerprinting tests, randomly amplified polymorphic DNA (RAPD) analysis and BOX-PCR, and varied considerably in their carriage of LES genomic islands and prophages. The genomic instability of the LES suggests that identification of this emerging transmissible strain could be a challenging task, and it questions whether discrimination is always a desirable feature of bacterial typing methods in the context of chronic CF infections.

Indexed as

Bacterial Typing TechniquesGenomic InstabilityCystic FibrosisDNA FingerprintingElectrophoresis, Gel, Pulsed-FieldGenotypeHumansMolecular EpidemiologyNorth AmericaPseudomonas aeruginosaPseudomonas InfectionsRandom Amplified Polymorphic DNA TechniqueUnited Kingdom

Identifiers

PMID20410349
PMCPMC2884492

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.