Evidence map›Paper›PMID 20410294›Full record

ArticleThe Journal of biological chemistry2010

Solution structure of a novel Cdc42 binding module of Bem1 and its interaction with Ste20 and Cdc42.

Tomoyuki Takaku, Kenji Ogura, Hiroyuki Kumeta, Naoki Yoshida, Fuyuhiko Inagaki

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Tomoyuki TakakuLaboratory of Structural Biology, Graduate School of Life Science, Hokkaido University, N-12, W-6 Kita-ku, Sapporo 060-0812, Japan.
Kenji Ogura
Hiroyuki Kumeta
Naoki Yoshida
Fuyuhiko Inagaki
Hokkaido University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bem1 is a scaffold protein essential for the establishment of cell polarity in Saccharomyces cerevisiae. This work reports the solution structure of a Cdc42 binding module of Bem1 comprising the second SH3 domain (SH3b) and its C-terminal flanking region termed Cdc42 interacting (CI). First, the structure of Bem1 SH3b-CI was determined by NMR spectroscopy, which shows that Bem1 SH3b-CI is a structurally and functionally related domain that binds Cdc42. Next, the solution structure of Bem1 SH3b-CI in complex with the proline-rich region of p21-activated kinase Ste20 (Ste20 PRR) was determined. Finally, the interaction surface of Bem1 SH3b-CI with Cdc42 was identified based on chemical shift perturbation studies which reveals that Bem1 SH3b-CI interacts simultaneously with both Ste20 PRR and Cdc42 using the opposite surfaces. Thus, Bem1 can tether Cdc42 and Ste20 in close proximity so that Cdc42 can efficiently interact with Ste20 Cdc42 and Rac interactive binding (CRIB). Based on the present results together with the previous biochemical studies (Lamson, R. E., Winters, M. J., and Pryciak, P. M. (2002) Mol. Cell. Biol. 22, 2939-2951 and Winters, M. J., and Pryciak, P. M. (2005) Mol. Cell. Biol. 25, 2177-2190), a model was suggested that the autoinhibition of Ste20 kinase activity by CRIB is released through the Cdc42-CRIB interaction, which is mediated by Bem1, and Ste20 is subsequently activated, an initial step for the establishment of the cell polarity.

Indexed as

Adaptor Proteins, Signal TransducingAmino Acid SequenceBiochemistrycdc42 GTP-Binding ProteinCell MembraneCell PolarityCrystallography, X-RayEscherichia coliIntracellular Signaling Peptides and ProteinsMagnetic Resonance SpectroscopyMAP Kinase Kinase KinasesMolecular Sequence DataProlineProtein BindingProtein Serine-Threonine KinasesSaccharomyces cerevisiaeAdaptor Proteins, Signal TransducingBEM1 protein, S cerevisiaecdc42 GTP-Binding ProteinIntracellular Signaling Peptides and ProteinsMAP Kinase Kinase KinasesProlineProtein Serine-Threonine KinasesSaccharomyces cerevisiae ProteinsSTE20 protein, S cerevisiae

Identifiers

PMID20410294
PMCPMC2885214
OpenAlexW2001667437

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.