ReviewBMC microbiology2010
PseudoMLSA: a database for multigenic sequence analysis of Pseudomonas species.
Review in BMC microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
27 citing papers in PubMed.
- Phenotypic and Genomic Characterization ofMicroorganisms · 2024Article
- Genetic Diversity and Population Structure ofPathogens (Basel, Switzerland) · 2023Article
- Comparative genomics ofFrontiers in microbiology · 2023Article
- Review
- Distinct phenotypic behaviours within a clonal population of Pseudomonas syringae pv. actinidiae.PloS one · 2022Article
- Trends in Molecular Diagnosis and Diversity Studies for Phytosanitary RegulatedMicroorganisms · 2021Review
- Pseudomonas eucalypticola sp. nov., a producer of antifungal agents isolated from Eucalyptus dunnii leaves.Scientific reports · 2021Article
- Genomic insights into a plant growth-promoting Pseudomonas koreensis strain with cyclic lipopeptide-mediated antifungal activity.MicrobiologyOpen · 2020Article
- Genotypic and phenotypic analyses reveal distinct population structures and ecotypes for sugar beet-associatedEcology and evolution · 2020Article
- Characterization of a Versatile Plant Growth-Promoting RhizobacteriumMicroorganisms · 2020Article
- Isolation of Pseudomonas fluorescens species highly resistant to pentachlorobenzene.Folia microbiologica · 2017Article
- Taxonomy and systematics of plant probiotic bacteria in the genomic era.AIMS microbiology · 2017Review
- Comparative genomic and functional analyses: unearthing the diversity and specificity of nematicidal factors in Pseudomonas putida strain 1A00316.Scientific reports · 2016Article
- Article
- Aggressive Emerging Pathovars of Xanthomonas arboricola Represent Widespread Epidemic Clones Distinct from Poorly Pathogenic Strains, as Revealed by Multilocus Sequence Typing.Applied and environmental microbiology · 2015Article
- A database for the taxonomic and phylogenetic identification of the genus Bradyrhizobium using multilocus sequence analysis.BMC genomics · 2015Article
- Genetic localization of a TetR-like transcriptional regulator gene in Pseudomonas fluorescens isolated from farmed fish.Journal of applied genetics · 2014Article
- rpoD gene pyrosequencing for the assessment of Pseudomonas diversity in a water sample from the Woluwe River.Applied and environmental microbiology · 2014Article
- PCR amplification of the hrcV gene through specific primers for detecting Pseudomonas syringae pathovars.World journal of microbiology & biotechnology · 2014Article
- Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe genus Pseudomonas comprises more than 100 species of environmental, clinical, agricultural, and biotechnological interest. Although, the recommended method for discriminating bacterial species is DNA-DNA hybridisation, alternative techniques based on multigenic sequence analysis are becoming a common practice in bacterial species discrimination studies. Since there is not a general criterion for determining which genes are more useful for species resolution; the number of strains and genes analysed is increasing continuously. As a result, sequences of different genes are dispersed throughout several databases. This sequence information needs to be collected in a common database, in order to be useful for future identification-based projects. DESCRIPTION: The PseudoMLSA Database is a comprehensive database of multiple gene sequences from strains of Pseudomonas species. The core of the database is composed of selected gene sequences from all Pseudomonas type strains validly assigned to the genus through 2008. The database is aimed to be useful for MultiLocus Sequence Analysis (MLSA) procedures, for the identification and characterisation of any Pseudomonas bacterial isolate. The sequences are available for download via a direct connection to the National Center for Biotechnology Information (NCBI). Additionally, the database includes an online BLAST interface for flexible nucleotide queries and similarity searches with the user's datasets, and provides a user-friendly output for easily parsing, navigating, and analysing BLAST results.
conclusionsThe PseudoMLSA database amasses strains and sequence information of validly described Pseudomonas species, and allows free querying of the database via a user-friendly, web-based interface available at http://www.uib.es/microbiologiaBD/Welcome.html. The web-based platform enables easy retrieval at strain or gene sequence information level; including references to published peer-reviewed articles, and direct external links to more specialized strain information databases (StrainInfo) and GeneBank (NCBI). The PseudoMLSA is intended to provide helpful strain-sequence information for a better and more comprehensive discriminative multigenic sequence based analysis of this special group of bacteria, contributing to enhance our understanding of the evolution of Pseudomonas species.
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