Evidence map›Paper›PMID 20409179›Full record

ArticleThe New phytologist2010

RNAi-mediated down-regulation of DCL1 and AGO1 induces developmental changes in resynthesized Arabidopsis allotetraploids.

Erika Lackey, Danny W-K Ng, Z Jeffrey Chen

Open access · bronzeAbstract read
In one paragraph

Article in The New phytologist, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 3 countries.

Erika LackeySection of Molecular Cell and Developmental Biology, The University of Texas at Austin, Austin, TX 78712, USA.
Danny W-K Ng
Z Jeffrey Chen
Institute of Molecular and Cell Biology · RU

Funding

Molecular Mechanisms of Genome DuplicationR01GM067015 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI CHEN, ZENGJIAN JEFFREY · 2003 to 2009
$1.4M
NIGMS NIH HHS GM067015NIGMS NIH HHS R01 GM067015
6 · The paper itself

Abstract

Both natural and newly synthesized allopolyploids display nonadditive gene expression changes through genetic and epigenetic mechanisms. The nonadditively expressed genes include many microRNA (miRNA) targets, suggesting a role for miRNAs and their targets in morphological variation in the allopolyploids and their progenitors. We produced dominant-negative transgenic allotetraploid plants in Arabidopsis using RNA interference (RNAi) that downregulates the expression of miRNA biogenesis genes, including DCL1 and AGO1. RNAi of DCL1 and AGO1 led to dominant negative phenotypes and decreased accumulation of several miRNAs and a tasiRNA tested in the transgenic resynthesized allotetraploids. The results demonstrated that miRNA biogenesis genes are effectively downregulated in the resynthesized allotetraploids containing redundant homoeologous genes that are difficult to be manipulated by conventional mutation screens. These lines will be useful for studying the effects of miRNA biogenesis genes on growth and developmental variation in the allopolyploids.

Indexed as

PolyploidyRNA InterferenceArabidopsisArabidopsis ProteinsArgonaute ProteinsCell Cycle ProteinsDown-RegulationGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantMicroRNAsPhenotypePlants, Genetically ModifiedRibonuclease IIIRNA, Small InterferingAGO1 protein, ArabidopsisArabidopsis ProteinsArgonaute ProteinsCell Cycle ProteinsDCL1 protein, ArabidopsisMicroRNAsRibonuclease IIIRNA, Small Interfering

Identifiers

PMID20409179
PMCPMC2859461
OpenAlexW2166561611

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.