Evidence map›Paper›PMID 20408893›Full record

ArticleImmunology2010

DM influences the abundance of major histocompatibility complex class II alleles with low affinity for class II-associated invariant chain peptides via multiple mechanisms.

Cornelia H Rinderknecht, Sujin Roh, Achal Pashine, Michael P Belmares, Namrata S Patil, Ning Lu, Phi Truong, Tieying Hou, Claudia Macaubas, Taejin Yoon and 3 more

Open access · greenAbstract read
In one paragraph

Article in Immunology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
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  8. The MHC class II cofactor HLA-DM interacts with Ig in B cells.Journal of immunology (Baltimore, Md. : 1950) · 2014
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Cornelia H RinderknechtDepartment of Pediatrics, Stanford University, Stanford, CA 94305-5164, USA.
Sujin Roh
Achal Pashine
Michael P Belmares
Namrata S Patil
Ning Lu
Phi Truong
Tieying Hou
Claudia Macaubas
Taejin Yoon
Nan Wang
Robert Busch
Elizabeth D Mellins
Stanford University · US

Funding

MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
MOLECULAR MODELING OF MHC II-PEPTIDE ISOMERSF32AI010298 · NIAID · STANFORD UNIVERSITY · PI BELMARES, MICHAEL P · 1999 to 2001
$40k
NIAID NIH HHS F32 AI010298NIAID NIH HHS T32 AI007290NIAID NIH HHS T32 AI07290Versus Arthritis 18543
6 · The paper itself

Abstract

DM catalyses class II-associated invariant chain peptide (CLIP) release, edits the repertoire of peptides bound to major histocompatibility complex (MHC) class II molecules, affects class II structure, and thereby modulates binding of conformation-sensitive anti-class II antibodies. Here, we investigate the ability of DM to enhance the cell surface binding of monomorphic antibodies. We show that this enhancement reflects increases in cell surface class II expression and total cellular abundance, but notably these effects are selective for particular alleles. Evidence from analysis of cellular class II levels after cycloheximide treatment and from pulse-chase experiments indicates that DM increases the half-life of affected alleles. Unexpectedly, the pulse-chase experiments also revealed an early effect of DM on assembly of these alleles. The allelically variant feature that correlates with susceptibility to these DM effects is low affinity for CLIP; DM-dependent changes in abundance are reduced by invariant chain (CLIP) mutants that enhance CLIP binding to class II. We found evidence that DM mediates rescue of peptide-receptive DR0404 molecules from inactive forms in vitro and evidence suggesting that a similar process occurs in cells. Thus, multiple mechanisms, operating along the biosynthetic pathway of class II molecules, contribute to DM-mediated increases in the abundance of low-CLIP-affinity alleles.

Indexed as

AllelesAnimalsAntibodiesAntigen PresentationAntigens, Differentiation, B-LymphocyteB-LymphocytesCell LineHalf-LifeHistocompatibility Antigens Class IIHLA-D AntigensHumansMicePeptidesProtein BindingProtein ConformationTransfectionAntibodiesAntigens, Differentiation, B-LymphocyteHistocompatibility Antigens Class IIHLA-D AntigensHLA-DM antigensinvariant chainPeptides

Identifiers

PMID20408893
PMCPMC2966754
OpenAlexW2146695728

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.