ArticleMolecular genetics and genomics : MGG2010
Molecular markers based on LTR retrotransposons BARE-1 and Jeli uncover different strata of evolutionary relationships in diploid wheats.
Article in Molecular genetics and genomics : MGG, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17 citing papers in PubMed.
- Article
- The grain quality of wheat wild relatives in the evolutionary context.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Review
- Genetic diversity, distribution and domestication history of the neglected GGATAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Retrotransposons: How the continuous evolutionary front shapes plant genomes for response to heat stress.Frontiers in plant science · 2022Review
- Exploiting the miniature inverted-repeat transposable elements insertion polymorphisms as an efficient DNA marker system for genome analysis and evolutionary studies in wheat and related species.Frontiers in plant science · 2022Article
- Genome-Wide Identification and Development of LTR Retrotransposon-Based Molecular Markers for thePlants (Basel, Switzerland) · 2021Article
- MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs).Journal of integrative bioinformatics · 2017Article
- Patterns of Evolutionary Trajectories and Domestication History within the Genus Hordeum Assessed by REMAP Markers.Journal of molecular evolution · 2017Article
- Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species.Molecular genetics and genomics : MGG · 2016Article
- Assessment of genetic diversity in Nordic timothy (Hereditas · 2016Article
- VRN-1 gene- associated prerequisites of spring growth habit in wild tetraploid wheat T. dicoccoides and the diploid A genome species.BMC plant biology · 2015Article
- Construction of a linkage map based on retrotransposon insertion polymorphisms in sweetpotato via high-throughput sequencing.Breeding science · 2015Article
- (GAA)n microsatellite as an indicator of the A genome reorganization during wheat evolution and domestication.Comparative cytogenetics · 2015Article
- Retrotransposon-based molecular markers for analysis of genetic diversity within the Genus Linum.BioMed research international · 2014Article
- Marker utility of miniature inverted-repeat transposable elements for wheat biodiversity and evolution.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae).Molecular genetics and genomics : MGG · 2011Article
- Genome size variation in diploid and tetraploid wild wheats.AoB PLANTS · 2010Article
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6 authors.
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Abstract
Molecular markers based on retrotransposon insertions are widely used for various applications including phylogenetic analysis. Multiple cases were described where retrotransposon-based markers, namely sequence-specific amplification polymorphism (SSAP), were superior to other marker types in resolving the phylogenetic relationships due to their higher variability and informativeness. However, the patterns of evolutionary relationships revealed by SSAP may be dependent on the underlying retrotransposon activity in different periods of time. Hence, the proper choice of retrotransposon family is essential for obtaining significant results. We compared the phylogenetic trees for a diverse set of diploid A-genome wheat species (Triticum boeoticum, T. urartu and T. monococcum) based on two unrelated retrotransposon families, BARE-1 and Jeli. BARE-1 belongs to Copia class and has a uniform distribution between common wheat (T. aestivum) genomes of different origin (A, B and D), indicating similar activity in the respective diploid genome donors. Gypsy-class family Jeli was found by us to be an A-genome retrotransposon with >70% copies residing in A genome of hexaploid common wheat, suggesting a burst of transposition in the history of A-genome progenitors. The results indicate that a higher Jeli transpositional activity was associated with T. urartu versus T. boeoticum speciation, while BARE-1 produced more polymorphic insertions during subsequent intraspecific diversification; as an outcome, each retrotransposon provides more informative markers at the corresponding level of phylogenetic relationships. We conclude that multiple retroelement families should be analyzed for an image of evolutionary relationships to be solid and comprehensive.
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