Evidence map›Paper›PMID 20405909›Full record

ArticleAnalytical chemistry2010

Site-selective fragmentation of peptides and proteins at quinone-modified cysteine residues investigated by ESI-MS.

Jolene K Diedrich, Ryan R Julian

Abstract read
In one paragraph

Article in Analytical chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Directed-Backbone Dissociation Following Bond-Specific Carbon-Sulfur UVPD at 213 nm.Journal of the American Society for Mass Spectrometry · 2018
    Article
  7. Review
  8. Article
  9. Article
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  11. Article
  12. Article
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  14. Review
  15. Article
  16. Article
  17. Fast and selective modification of thiol proteins/peptides by N-(phenylseleno)phthalimide.Journal of the American Society for Mass Spectrometry · 2012
    Article
  18. Dissociation chemistry of hydrogen-deficient radical peptide anions.Journal of the American Society for Mass Spectrometry · 2012
    Article
  19. Tandem MS analysis of selenamide-derivatized peptide ions.Journal of the American Society for Mass Spectrometry · 2011
    Article
  20. Shedding light on the frontier of photodissociation.Journal of the American Society for Mass Spectrometry · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jolene K DiedrichDepartment of Chemistry, University of California, Riverside, California 92521, USA.
Ryan R Julian
University of California, Riverside · US

Funding

Probing Natively Disordered Proteins with Selective Noncovalent Adduct Protein PrR01GM084106 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI JULIAN, RYAN ROY · 2009 to 2010
$575k
NIGMS NIH HHS R01 GM084106NIGMS NIH HHS R01GM084106
6 · The paper itself

Abstract

Described herein are several unique analytical applications utilizing mass spectrometry and the selective modification of the free thiol form of cysteine in both peptides and proteins by various quinones. This simple modification can be used to quantify the number of free or disulfide bound cysteines in a protein. In addition, quinone modification can also be used to easily probe the solvent accessibility of cysteine residues, which provides information about protein structure or folding state. Furthermore, the chromophoric properties of the quinone moiety can be leveraged for site specific photodissociation of the backbone. The photodissociation reveals both the presence and location of modified cysteine residues. For example, cleavage of the protein backbone of alpha-hemoglobin is observed selectively at a single cysteine out of 140 residues in the whole protein. This selective backbone fragmentation is accompanied by a parent ion mass loss, which is unique to the modifying quinone. When combined, this information can be used to determine both the presence and site of modification generated by naturally occurring molecules, such as dopamine, which can harness quinone chemistry to modify proteins.

Indexed as

BenzoquinonesCysteinePeptide FragmentsPeptidesProteinsSubstrate SpecificityTrypsinBenzoquinonesCysteinePeptide FragmentsPeptidesProteinsquinoneTrypsin

Identifiers

PMID20405909
PMCPMC2898282
OpenAlexW1980933881

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.