Evidence map›Paper›PMID 20404498›Full record

ArticlePlant signaling & behavior2010

Identification of recognition sequence of ANAC078 protein by the cyclic amplification and selection of targets technique.

Yukinori Yabuta, Teruyuki Morishita, Yusuke Kojima, Takanori Maruta, Ayako Nishizawa-Yokoi, Shigeru Shigeoka

Open access · bronzeAbstract readComment
In one paragraph

Article in Plant signaling & behavior, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Regulation of proteasome assembly and activity in health and disease.Nature reviews. Molecular cell biology · 2018
    Review
  6. Article
  7. Article
  8. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yukinori YabutaFaculty of Agriculture, School of Agricultural, Biological and Environmental Sciences, Tottori University, Koyama-Minami, Tottori, Japan.
Teruyuki Morishita
Yusuke Kojima
Takanori Maruta
Ayako Nishizawa-Yokoi
Shigeru Shigeoka
Kindai University · JPTottori University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NAC (NAM, ATAF and CUC2) is one of the largest families of transcription factors in the plant genome, but the function and regulation of most NAC genes are still largely unknown. We recently isolated a gene encoding a NAC transcription factor designated ANAC078 from Arabidopsis plants and identified 166 genes up-regulated in ANAC078-overexpressing plants compared with the wild-type plants under high-light stress. The cyclic amplification and selection of targets (CASTing) technique showed that the ANAC078 recognition sequence contains T[A/T/C][A/T/G/C]C[T/G]TG[T/G]G as a DNA-binding site. The recognition sequence identified by this technique was detected in the promoter region of 52 up-regulated genes, including the gene for a transcription factor, proteasome subunits, peroxidase, and a protein kinase. The findings suggest these genes to be directly targeted by the ANAC078 protein.

Identifiers

PMID20404498
PMCPMC3001562
OpenAlexW2090900094

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.