Evidence map›Paper›PMID 20404135›Full record

ArticleBlood2010

Downstream targets of HOXB4 in a cell line model of primitive hematopoietic progenitor cells.

Han M Lee, Hui Zhang, Vincent Schulz, David P Tuck, Bernard G Forget

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. An integrated global regulatory network of hematopoietic precursor cell self-renewal and differentiation.Integrative biology : quantitative biosciences from nano to macro · 2018
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Ex vivo expansion of umbilical cord blood: where are we?International journal of hematology · 2012
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Han M LeeDepartments of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520-8021, USA.
Hui Zhang
Vincent Schulz
David P Tuck
Bernard G Forget
Pediatrics and Genetics · USYale University · US

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI DAVID L RIMM · 1985 to 2026
$85.0M
TRANSCRIPTION FACTORS/ GENETIC SEQUENCES REQUIRED FOR CD34 IN EARLY HEMATOPOIESISP01HL063357 · NHLBI · YALE UNIVERSITY · PI FORGET, BERNARD G · 1999 to 2008
$17.4M
GENETICS AND GENOMICS OF HUMAN DISEASET32HD007149 · NICHD · YALE UNIVERSITY · PI James P Noonan · 1985 to 2026
$8.2M
Yale Center of Excellence in Molecular HematologyP30DK072442 · NIDDK · YALE UNIVERSITY · PI KRAUSE, DIANE S · 2005 to 2010
$5.2M
RED BLOOD CELL DISEASES, HEMOSTASIS, AND BLOOD BANKINGT32HL007262 · NHLBI · YALE UNIVERSITY · PI DHODAPKAR, MADHAV V · 1985 to 2011
$4.0M
Function of homeobox gene Pitx2 in hematopoiesisK08DK064809 · NIDDK · YALE UNIVERSITY · PI ZHANG, HUI Z · 2003 to 2007
$686k
NCI NIH HHS P30 CA016359NCI NIH HHS P30-CA016359NHLBI NIH HHS P01 HL063357NHLBI NIH HHS P01-HL63357NHLBI NIH HHS T32 HL007262NHLBI NIH HHS T32-HL07262NICHD NIH HHS T32 HD007149NICHD NIH HHS T32-HD07149NIDDK NIH HHS K08 DK064809NIDDK NIH HHS K08-DK064809NIDDK NIH HHS P30 DK072442NIDDK NIH HHS P30-DK72442
6 · The paper itself

Abstract

Enforced expression of the homeobox transcription factor HOXB4 has been shown to enhance hematopoietic stem cell self-renewal and expansion ex vivo and in vivo. To investigate the downstream targets of HOXB4 in hematopoietic progenitor cells, HOXB4 was constitutively overexpressed in the primitive hematopoietic progenitor cell line EML. Two genome-wide analytical techniques were used: RNA expression profiling using microarrays and chromatin immunoprecipitation (ChIP)-chip. RNA expression profiling revealed that 465 gene transcripts were differentially expressed in KLS (c-Kit(+), Lin(-), Sca-1(+))-EML cells that overexpressed HOXB4 (KLS-EML-HOXB4) compared with control KLS-EML cells that were transduced with vector alone. In particular, erythroid-specific gene transcripts were observed to be highly down-regulated in KLS-EML-HOXB4 cells. ChIP-chip analysis revealed that the promoter region for 1910 genes, such as CD34, Sox4, and B220, were occupied by HOXB4 in KLS-EML-HOXB4 cells. Side-by-side comparison of the ChIP-chip and RNA expression profiling datasets provided correlative information and identified Gp49a and Laptm4b as candidate "stemness-related" genes. Both genes were highly ranked in both dataset lists and have been previously shown to be preferentially expressed in hematopoietic stem cells and down-regulated in mature hematopoietic cells, thus making them attractive candidates for future functional studies in hematopoietic cells.

Indexed as

Gene Expression RegulationTranscription, GeneticAnimalsApoptosisCell DivisionCell LineageCell Line, TransformedChromatin ImmunoprecipitationClone CellsGene Expression ProfilingGenes, ReporterHematopoietic Stem CellsHomeodomain ProteinsLeukocyte Common AntigensMiceMyelopoiesisHomeodomain ProteinsHoxb4 protein, mouseLeukocyte Common AntigensRecombinant Fusion ProteinsRNA, MessengerTranscription Factors

Identifiers

PMID20404135
PMCPMC2918329
OpenAlexW2049497135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.