Evidence map›Paper›PMID 20404088›Full record

ArticleMolecular and cellular biology2010

KLF3 regulates muscle-specific gene expression and synergizes with serum response factor on KLF binding sites.

Charis L Himeda, Jeffrey A Ranish, Richard C M Pearson, Merlin Crossley, Stephen D Hauschka

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 61 citations in OpenAlex.

  1. Ets2 Is an Activity-Dependent Transcriptional Regulator of a Fast-Twitch Muscle Program.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
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  19. The classic metal-sensing transcription factor MTF1 promotes myogenesis in response to copper.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  20. Krüppel-like factor 3 inhibition by mutated lncRNAThe Journal of experimental medicine · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Charis L HimedaDepartment of Biochemistry, Box 357350, University of Washington, Seattle, WA 98195, USA.
Jeffrey A Ranish
Richard C M Pearson
Merlin Crossley
Stephen D Hauschka
The University of Sydney · AUUniversity of Washington · USInstitute for Systems Biology · US

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
Signalling via Dystrobrevin in Muscular DystrophyP01NS046788 · NINDS · UNIVERSITY OF WASHINGTON · PI FROEHNER, STANLEY C · 2004 to 2013
$12.8M
EXPERIMENTAL PATHOLOGY OF CARDIOVASCULAR DISEASET32HL007312 · NHLBI · UNIVERSITY OF WASHINGTON · PI MAJESKY, MARK W., SCHWARTZ, STEPHEN MARK · 1985 to 2019
$11.8M
Striated Muscle Gene Transcription and Regulatory Gene Cassettes for Gene TherapyR01AR018860 · NIAMS · UNIVERSITY OF WASHINGTON · PI HAUSCHKA, STEPHEN DENISON · 1986 to 2012
$3.4M
NHLBI PROTEOMICS INITIATIVE-268028179N01HV028179 · HV · INSTITUTE FOR SYSTEMS BIOLOGY · 2002 to 2002
–
NHLBI NIH HHS N01 HV028179NHLBI NIH HHS N01-HV-28179NHLBI NIH HHS T32 HL007312NHLBI NIH HHS T32-HL007312NIAMS NIH HHS R01 AR018860NIAMS NIH HHS R01-AR18860NIGMS NIH HHS P50 GM076547NINDS NIH HHS 1P01-NS046788NINDS NIH HHS P01 NS046788PHS HHS P50GMO76547
6 · The paper itself

Abstract

This study identifies KLF3 as a transcriptional regulator of muscle genes and reveals a novel synergistic interaction between KLF3 and serum response factor (SRF). Using quantitative proteomics, KLF3 was identified as one of several candidate factors that recognize the MPEX control element in the Muscle creatine kinase (MCK) promoter. Chromatin immunoprecipitation analysis indicated that KLF3 is enriched at many muscle gene promoters (MCK, Myosin heavy chain IIa, Six4, Calcium channel receptor alpha-1, and Skeletal alpha-actin), and two KLF3 isoforms are upregulated during muscle differentiation. KLF3 and SRF physically associate and synergize in transactivating the MCK promoter independently of SRF binding to CArG motifs. The zinc finger and repression domains of KLF3 plus the MADS box and transcription activation domain of SRF are implicated in this synergy. Our results provide the first evidence of a role for KLF3 in muscle gene regulation and reveal an alternate mechanism for transcriptional regulation by SRF via its recruitment to KLF binding sites. Since both factors are expressed in all muscle lineages, SRF may regulate many striated- and smooth-muscle genes that lack known SRF control elements, thus further expanding the breadth of the emerging CArGome.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBinding SitesCell DifferentiationCell LineCreatine Kinase, MM FormDNA PrimersHumansIn Vitro TechniquesKruppel-Like Transcription FactorsMiceMolecular Sequence DataMyoblasts, SkeletalPromoter Regions, GeneticProtein Interaction Domains and MotifsCreatine Kinase, MM FormDNA PrimersKlf3 protein, mouseKruppel-Like Transcription FactorsSerum Response Factor

Identifiers

PMID20404088
PMCPMC2897560
OpenAlexW2104961127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.