Evidence map›Paper›PMID 20403208›Full record

ArticleBMC infectious diseases2010

Comparison of commercial DNA preparation kits for the detection of Brucellae in tissue using quantitative real-time PCR.

Herbert Tomaso, Mireille Kattar, Meike Eickhoff, Ulrich Wernery, Sascha Al Dahouk, Eberhard Straube, Heinrich Neubauer, Holger C Scholz

Open access · goldAbstract readComparative StudyEvaluation Study
In one paragraph

Article in BMC infectious diseases, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Two novel real-time PCR assays forMicrobiology spectrum · 2026
    Article
  3. Article
  4. Article
  5. Laboratory Diagnosis of Human Brucellosis.Clinical microbiology reviews · 2019
    Review
  6. Answer to February 2018 Photo Quiz.Journal of clinical microbiology · 2018
    Article
  7. Detection of Francisella tularensis in voles in Finland.Vector borne and zoonotic diseases (Larchmont, N.Y.) · 2014
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 7 institutions in 4 countries.

Herbert TomasoFriedrich-Loeffler-Institut, Institute of Bacterial Infections and Zoonoses, Naumburgerstrasse 96a, 07743 Jena, Germany. herbert.tomaso@web.de
Mireille Kattar
Meike Eickhoff
Ulrich Wernery
Sascha Al Dahouk
Eberhard Straube
Heinrich Neubauer
Holger C Scholz
Friedrich-Loeffler-Institut · DEAmerican University of Beirut · LBCentral Veterinary Research Laboratory · AEFriedrich Schiller University Jena · DEInstitut für Mikrobiologie der BundeswehrRoche (Switzerland) · CHRWTH Aachen University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe detection of Brucellae in tissue specimens using PCR assays is difficult because the amount of bacteria is usually low. Therefore, optimised DNA extraction methods are critical. The aim of this study was to assess the performance of commercial kits for the extraction of Brucella DNA.

methodsFive kits were evaluated using clinical specimens: QIAamp DNA Mini Kit (QIAGEN), peqGold Tissue DNA Mini Kit (PeqLab), UltraClean Tissue and Cells DNA Isolation Kit (MoBio), DNA Isolation Kit for Cells and Tissues (Roche), and NucleoSpin Tissue (Macherey-Nagel). DNA yield was determined using a quantitative real-time PCR assay targeting IS711 that included an internal amplification control.

resultsKits of QIAGEN and Roche provided the highest amount of DNA, Macherey-Nagel and Peqlab products were intermediate whereas MoBio yielded the lowest amount of DNA. Differences were significant (p < 0.05) and of diagnostic relevance. Sample volume, elution volume, and processing time were also compared.

conclusionsWe observed differences in DNA yield as high as two orders of magnitude for some samples between the best and the worst DNA extraction kits and inhibition was observed occasionally. This indicates that DNA purification may be more relevant than expected when the amount of DNA in tissue is very low.

Indexed as

Bacteriological TechniquesBrucellaBrucellosisDNA, BacterialHumansMolecular BiologyPolymerase Chain ReactionDNA, Bacterial

Identifiers

PMID20403208
PMCPMC2873554
OpenAlexW1987961391

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.