ReviewMarine biotechnology (New York, N.Y.)2011
A review of the major penaeid shrimp EST studies and the construction of a shrimp transcriptome database based on the ESTs from four penaeid shrimp.
Review in Marine biotechnology (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
21 citing papers in PubMed, 57 citations in OpenAlex.
- Transcriptome of the pygmy grasshopperPeerJ · 2023Article
- Identification of Functional SSR Markers in Freshwater Ornamental Shrimps Neocaridina denticulata Using Transcriptome Sequencing.Marine biotechnology (New York, N.Y.) · 2020Article
- Article
- Single-molecule long-read sequencing facilitates shrimp transcriptome research.Scientific reports · 2018Article
- The State of "Frontiers in genetics · 2018Review
- Increased nucleoside diphosphate kinase activity induces white spot syndrome virus infection in Litopenaeus vannamei.PloS one · 2017Article
- Transcriptional control of an essential ribozyme in Drosophila reveals an ancient evolutionary divide in animals.PLoS genetics · 2015Article
- RNA-seq analysis of Macrobrachium rosenbergii hepatopancreas in response to Vibrio parahaemolyticus infection.Gut pathogens · 2015Article
- Structure of nucleoside diphosphate kinase from pacific shrimp (Litopenaeus vannamei) in binary complexes with purine and pyrimidine nucleoside diphosphates.Acta crystallographica. Section F, Structural biology communications · 2014Article
- ShrimpGPAT: a gene and protein annotation tool for knowledge sharing and gene discovery in shrimp.BMC genomics · 2014Article
- Comparison of protein expression profiles of the hepatopancreas in Fenneropenaeus chinensis challenged with heat-inactivated Vibrio anguillarum and white spot syndrome virus.Marine biotechnology (New York, N.Y.) · 2014Article
- Transcriptome analysis of the Portunus trituberculatus: de novo assembly, growth-related gene identification and marker discovery.PloS one · 2014Article
- Article
- The development of a high density linkage map for black tiger shrimp (Penaeus monodon) based on cSNPs.PloS one · 2014Article
- SNP discovery in the transcriptome of white Pacific shrimp Litopenaeus vannamei by next generation sequencing.PloS one · 2014Article
- Current status of genetics and genomics of reared penaeid shrimp: information relevant to access and benefit sharing.Marine biotechnology (New York, N.Y.) · 2013Review
- In-depth tanscriptomic analysis on giant freshwater prawns.PloS one · 2013Article
- Enhancement of shrimp antiviral immune response through caspase-dependent apoptosis by small molecules.Marine biotechnology (New York, N.Y.) · 2011Article
- Fosmid library end sequencing reveals a rarely known genome structure of marine shrimp Penaeus monodon.BMC genomics · 2011Article
- Transcriptomics of a giant freshwater prawn (Macrobrachium rosenbergii): de novo assembly, annotation and marker discovery.PloS one · 2011Article
Corrections and comments
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Authors and funding
8 authors at 5 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
By economic value, shrimp is currently the most important seafood commodity worldwide, and these animals are often the subject of scientific research in shrimp farming countries. High throughput methods, such as expressed sequence tags (ESTs), were originally developed to study human genomics, but they are now available for studying other important organisms, including shrimp. ESTs are short sequences generated by sequencing randomly selected cDNA clones from a cDNA library. This is currently the most efficient and powerful method for providing transcriptomic data for organisms with an uncharacterized genome. This review will summarize the sixteen major shrimp EST studies that have been conducted to date. In addition, we analyzed the EST data downloaded from NCBI dbEST for the four major penaeid shrimp species and constructed a database to host all of these EST data as well as our own analysis results. This database provides the shrimp aquaculture research community with an outline of the shrimp transcriptome as well as a tool for shrimp gene identification.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.