Evidence map›Paper›PMID 20400458›Full record

ArticleHuman molecular genetics2010

Genome-wide association of anthropometric traits in African- and African-derived populations.

Sun J Kang, Charleston W K Chiang, Cameron D Palmer, Bamidele O Tayo, Guillaume Lettre, Johannah L Butler, Rachel Hackett, Adebowale A Adeyemo, Candace Guiducci, Ilze Berzins and 13 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01844700 (1/2-MC4R Genotype and Pediatric Antipsychotic Drug- Induced Weight Gain), which is not on this map. Cited by 67 papers, 10 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 10 pooled it
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01844700 phase4terminatednot on this mapstarted 2013, after this paper: background citation

1/2-MC4R Genotype and Pediatric Antipsychotic Drug- Induced Weight Gain

TypeinterventionalSponsorNorthwell HealthRan2013 to 2014Enrolled14ConditionsHigh Risk MC4R Genotype, Low Risk MC4R Genotype, One Week or Less Antipsychotic Lifetime ExposureArmsZiprasidone, aripiprazole, quetiapine, or risperidone
3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 10 syntheses or guidelines pooled it, 93 citations in OpenAlex.

  1. Pooled it
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  6. Implication of European-derived adiposity loci in African Americans.International journal of obesity (2005) · 2012
    Pooled it
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  11. Review
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  19. Genetics of Obesity in East Asians.Frontiers in genetics · 2020
    Review
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 4 countries.

Sun J KangDepartment of Biostatistics and Epidemiology, Case Western Reserve University, Cleveland, OH 44106, USA.
Charleston W K Chiang
Cameron D Palmer
Bamidele O Tayo
Guillaume Lettre
Johannah L Butler
Rachel Hackett
Adebowale A Adeyemo
Candace Guiducci
Ilze Berzins
Thutrang T Nguyen
Tao Feng
Amy Luke
Daniel Shriner
Kristin Ardlie
Charles Rotimi
Rainford Wilks
Terrence Forrester
Colin A McKenzie
Helen N Lyon
Richard S Cooper
Xiaofeng Zhu
Joel N Hirschhorn
Broad Institute · USLoyola University Chicago · USCase Western Reserve University · USNational Institutes of Health · USUniversity of the West Indies System · JMMontreal Heart Institute · CAMRC Epidemiology Unit · GB

Funding

Genetic epidemiology of complex diseasesZIAHG200362 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ROTIMI, CHARLES · 2009 to 2025
$54.7M
AN NCRR CENTER FOR HIGH THROUGHPUT SNP GENOTYPING AND ANALYSIS: GAIN NETWORKU54RR020278 · NCRR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY · 2004 to 2008
$14.4M
Cell Interactions in the Inflamed Intestinal MucosaR01DK075787 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI JOEL N HIRSCHHORN · 2007 to 2026
$13.1M
GENETICS OF HYPERTENSION IN BLACKSR01HL053353 · NHLBI · LOYOLA UNIVERSITY CHICAGO · PI COOPER, RICHARD STANLEY · 1995 to 2013
$8.3M
Statistical methods for analyzing high-throughput genotype dataR01HG003054 · NHGRI · LOYOLA UNIVERSITY CHICAGO · PI ZHU, XIAOFENG · 2005 to 2017
$3.6M
HYPERTENSION IN POPULATIONS OF WEST AFRICAN ORIGINR37HL045508 · NHLBI · LOYOLA UNIVERSITY CHICAGO · PI COOPER, RICHARD STANLEY · 1998 to 2008
$3.3M
Defining an Obesity QTL on Chromosome 3qR01HL074166 · NHLBI · LOYOLA UNIVERSITY CHICAGO · PI ZHU, XIAOFENG · 2004 to 2007
$2.9M
Genetic epidemiology of complex diseasesZ01HG200362 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ROTIMI, CHARLES · 2008 to 2008
$1.7M
Intramural NIH HHS Z01 HG200362NCRR NIH HHS U54 RR020278NHGRI NIH HHS R01 HG003054NHGRI NIH HHS R01HG003054NHLBI NIH HHS R01 HL053353NHLBI NIH HHS R01 HL074166NHLBI NIH HHS R01HL074166NHLBI NIH HHS R01HL53353NHLBI NIH HHS R37 HL045508NHLBI NIH HHS R37HL45508NIDDK NIH HHS R01 DK075787NIDDK NIH HHS R01DK075787
6 · The paper itself

Abstract

Genome-wide association (GWA) studies have identified common variants that are associated with a variety of traits and diseases, but most studies have been performed in European-derived populations. Here, we describe the first genome-wide analyses of imputed genotype and copy number variants (CNVs) for anthropometric measures in African-derived populations: 1188 Nigerians from Igbo-Ora and Ibadan, Nigeria, and 743 African-Americans from Maywood, IL. To improve the reach of our study, we used imputation to estimate genotypes at approximately 2.1 million single-nucleotide polymorphisms (SNPs) and also tested CNVs for association. No SNPs or common CNVs reached a genome-wide significance level for association with height or body mass index (BMI), and the best signals from a meta-analysis of the two cohorts did not replicate in approximately 3700 African-Americans and Jamaicans. However, several loci previously confirmed in European populations showed evidence of replication in our GWA panel of African-derived populations, including variants near IHH and DLEU7 for height and MC4R for BMI. Analysis of global burden of rare CNVs suggested that lean individuals possess greater total burden of CNVs, but this finding was not supported in an independent European population. Our results suggest that there are not multiple loci with strong effects on anthropometric traits in African-derived populations and that sample sizes comparable to those needed in European GWA studies will be required to identify replicable associations. Meta-analysis of this data set with additional studies in African-ancestry populations will be helpful to improve power to detect novel associations.

Indexed as

DNA Copy Number VariationsGenome-Wide Association StudyAdolescentAdultAgedAnthropometryBlack or African AmericanBlack PeopleGenotypeHumansIllinoisJamaicaMiddle AgedModels, StatisticalNigeriaPolymorphism, Single Nucleotide

Identifiers

PMID20400458
PMCPMC2883343
OpenAlexW2162854231

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.