Evidence map›Paper›PMID 20399190›Full record

ArticleStructure (London, England : 1993)2010

Structure of a virulence regulatory factor CvfB reveals a novel winged helix RNA binding module.

Yasuhiko Matsumoto, Qingping Xu, Shinya Miyazaki, Chikara Kaito, Carol L Farr, Herbert L Axelrod, Hsiu-Ju Chiu, Heath E Klock, Mark W Knuth, Mitchell D Miller and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Genomic Characterization ofFrontiers in microbiology · 2019
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Yasuhiko MatsumotoLaboratory of Microbiology, Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo 113-0033, Japan.
Qingping Xu
Shinya Miyazaki
Chikara Kaito
Carol L Farr
Herbert L Axelrod
Hsiu-Ju Chiu
Heath E Klock
Mark W Knuth
Mitchell D Miller
Marc-André Elsliger
Ashley M Deacon
Adam Godzik
Scott A Lesley
Kazuhisa Sekimizu
Ian A Wilson
SLAC National Accelerator Laboratory · USScripps Research Institute · USThe University of Tokyo · JPGenomics Institute of the Novartis Research Foundation · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

Technology Evaluation CoreU54GM074898 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2005 to 2009
$50.6M
NIGMS NIH HHS U54 GM074898
6 · The paper itself

Abstract

CvfB is a conserved regulatory protein important for the virulence of Staphylococcus aureus. We show here that CvfB binds RNA. The crystal structure of the CvfB ortholog from Streptococcus pneumoniae at 1.4 A resolution reveals a unique RNA binding protein that is formed from a concatenation of well-known structural modules that bind nucleic acids: three consecutive S1 RNA binding domains and a winged helix (WH) domain. The third S1 and the WH domains are required for cooperative RNA binding and form a continuous surface that likely contributes to the RNA interaction. The WH domain is critical to CvfB function and contains a unique sequence motif. Thus CvfB represents a novel assembly of modules for binding RNA.

Indexed as

Amino Acid SequenceComplement C3 Convertase, Alternative PathwayHelix-Turn-Helix MotifsHemolysin ProteinsKineticsMolecular Sequence DataNucleic AcidsProtein BindingProtein ConformationProtein Structure, TertiaryRNARNA-Binding ProteinsSequence Homology, Amino AcidStaphylococcus aureusVirulenceComplement C3 Convertase, Alternative PathwayHemolysin ProteinsNucleic AcidsRNARNA-Binding ProteinsCvfBRNA bindingS1 domainvirulenceWinged-helix domain

Identifiers

PMID20399190
PMCPMC2858061
OpenAlexW2094344942

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.