Evidence map›Paper›PMID 20399183›Full record

ArticleStructure (London, England : 1993)2010

Pi release from myosin: a simulation analysis of possible pathways.

Marco Cecchini, Yuri Alexeev, Martin Karplus

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
  2. Review
  3. Homologous mutations in human β, embryonic, and perinatal muscle myosins have divergent effects on molecular power generation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. A reverse stroke characterizes the force generation of cardiac myofilaments, leading to an understanding of heart function.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Structural basis for power stroke vs. Brownian ratchet mechanisms of motor proteins.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  11. Review
  12. Article
  13. Molecular mechanisms underlying deoxy-ADP.Pi activation of pre-powerstroke myosin.Protein science : a publication of the Protein Society · 2017
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Trapping the ATP binding state leads to a detailed understanding of the F1-ATPase mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  19. Article
  20. Phosphate release coupled to rotary motion of F1-ATPase.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Marco CecchiniLaboratoire de Chimie Biophysique, ISIS, Université de Strasbourg, 67000 Strasbourg, France. mcecchini@isis.u-strasbg.fr
Yuri Alexeev
Martin Karplus

Funding

THEORETICAL SUTDIES OF BIOMOLECULESR01GM030804 · NIGMS · HARVARD UNIVERSITY · PI KARPLUS, MARTIN · 1985 to 2011
$2.7M
NIGMS NIH HHS R01 GM030804
6 · The paper itself

Abstract

The release of phosphate (Pi) is an important element in actomyosin function and has been shown to be accelerated by the binding of myosin to actin. To provide information about the structural elements important for Pi release, possible escape pathways from various isolated myosin II structures have been determined by molecular dynamics simulations designed for studying such slow processes. The residues forming the pathways were identified and their role was evaluated by mutant simulations. Pi release is slow in the pre-powerstroke structure, an important element in preventing the powerstroke prior to actin binding, and is much more rapid for Pi modeled into the post-rigor and rigor-like structures. The previously proposed backdoor route is dominant in the pre-powerstroke and post-rigor states, whereas a different path is most important in the rigor-like state. This finding suggests a mechanism for the actin-activated acceleration of Pi release.

Indexed as

ActinsAnimalsComputer SimulationCrystallography, X-RayDictyosteliumDNA Mutational AnalysisKineticsModels, MolecularMolecular ConformationMyosinsPhosphatesProtein ConformationProtein Structure, SecondaryTemperatureActinsMyosinsPhosphates

Identifiers

PMID20399183
PMCPMC2858069

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.