Evidence map›Paper›PMID 20399152›Full record

ArticleDNA repair2010

Genetic interactions between HNT3/Aprataxin and RAD27/FEN1 suggest parallel pathways for 5' end processing during base excision repair.

James M Daley, Thomas E Wilson, Dindial Ramotar

Abstract read
In one paragraph

Article in DNA repair, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

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  14. Repair of double-strand breaks by end joining.Cold Spring Harbor perspectives in biology · 2013
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

James M DaleyCentre de Recherche, Hôpital Maisonneuve-Rosemont, Université de Montréal, Montréal, QC H1T 2M4, Canada.
Thomas E Wilson
Dindial Ramotar
Hôpital Maisonneuve-Rosemont · CAUniversity of Michigan–Ann Arbor · US

Funding

Systematic Genetic Analysis of Yeast NHEJR01CA102563 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WILSON, THOMAS EDWARD · 2004 to 2014
$2.4M
NCI NIH HHS R01 CA102563
6 · The paper itself

Abstract

Mutations in Aprataxin cause the neurodegenerative syndrome ataxia oculomotor apraxia type 1. Aprataxin catalyzes removal of adenosine monophosphate (AMP) from the 5' end of a DNA strand, which results from an aborted attempt to ligate a strand break containing a damaged end. To gain insight into which DNA lesions are substrates for Aprataxin action in vivo, we deleted the Saccharomyces cerevisiae HNT3 gene, which encodes the Aprataxin homolog, in combination with known DNA repair genes. While hnt3Delta single mutants were not sensitive to DNA damaging agents, loss of HNT3 caused synergistic sensitivity to H(2)O(2) in backgrounds that accumulate strand breaks with blocked termini, including apn1Delta apn2Delta tpp1Delta and ntg1Delta ntg2Delta ogg1Delta. Loss of HNT3 in rad27Delta cells, which are deficient in long-patch base excision repair (LP-BER), resulted in synergistic sensitivity to H(2)O(2) and MMS, indicating that Hnt3 and LP-BER provide parallel pathways for processing 5' AMPs. Loss of HNT3 also increased the sister chromatid exchange frequency. Surprisingly, HNT3 deletion partially rescued H(2)O(2) sensitivity in recombination-deficient rad51Delta and rad52Delta cells, suggesting that Hnt3 promotes formation of a repair intermediate that is resolved by recombination.

Indexed as

DNA RepairAdenosine MonophosphateAlkylationCatalytic DomainDNA-Binding ProteinsDNA BreaksDNA, FungalFlap EndonucleasesGene DeletionHumansHydrogen PeroxideMethyl MethanesulfonateNuclear ProteinsOxidative StressPhenotypePoint MutationAdenosine MonophosphateAPTX protein, humanDNA-Binding ProteinsDNA, FungalFlap EndonucleasesHydrogen PeroxideMethyl MethanesulfonateNuclear ProteinsRAD27 protein, S cerevisiaeRad51 RecombinaseRad52 DNA Repair and Recombination ProteinSaccharomyces cerevisiae Proteins

Identifiers

PMID20399152
PMCPMC3319107
OpenAlexW2056193220

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.