Evidence map›Paper›PMID 20393561›Full record

ArticleNature2010

Dissection of genetically complex traits with extremely large pools of yeast segregants.

Ian M Ehrenreich, Noorossadat Torabi, Yue Jia, Jonathan Kent, Stephen Martis, Joshua A Shapiro, David Gresham, Amy A Caudy, Leonid Kruglyak

Abstract read
In one paragraph

Article in Nature, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 269 papers.

0numbers the graph read from it
0cells of the map it votes in
269citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

269 citing papers in PubMed.

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  13. bioRxiv : the preprint server for biology · 2025
    Article
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209 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Ian M EhrenreichLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08540, USA.
Noorossadat Torabi
Yue Jia
Jonathan Kent
Stephen Martis
Joshua A Shapiro
David Gresham
Amy A Caudy
Leonid Kruglyak

Funding

Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI GAMMIE, ALISON E · 2004 to 2013
$30.6M
Quantitative Methods for Linkage and Associated StudiesR37MH059520 · NIMH · PRINCETON UNIVERSITY · PI KRUGLYAK, LEONID · 2002 to 2011
$3.6M
Regulation of Quiescence in Eukaryotic CellsR01GM107466 · NIGMS · NEW YORK UNIVERSITY · PI GRESHAM, DAVID · 2013 to 2022
$3.0M
Defining the genomic architecture of expression quantitative traitsF32HG005176 · NHGRI · PRINCETON UNIVERSITY · PI EHRENREICH, IAN MICHAEL · 2009 to 2010
$80k
Howard Hughes Medical InstituteNHGRI NIH HHS F32 HG005176NHGRI NIH HHS F32 HG51762NIGMS NIH HHS P50 GM071508NIGMS NIH HHS R01 GM107466NIMH NIH HHS R37 MH059520NIMH NIH HHS R37 MH59520
6 · The paper itself

Abstract

Most heritable traits, including many human diseases, are caused by multiple loci. Studies in both humans and model organisms, such as yeast, have failed to detect a large fraction of the loci that underlie such complex traits. A lack of statistical power to identify multiple loci with small effects is undoubtedly one of the primary reasons for this problem. We have developed a method in yeast that allows the use of much larger sample sizes than previously possible and hence permits the detection of multiple loci with small effects. The method involves generating very large numbers of progeny from a cross between two Saccharomyces cerevisiae strains and then phenotyping and genotyping pools of these offspring. We applied the method to 17 chemical resistance traits and mitochondrial function, and identified loci for each of these phenotypes. We show that the level of genetic complexity underlying these quantitative traits is highly variable, with some traits influenced by one major locus and others by at least 20 loci. Our results provide an empirical demonstration of the genetic complexity of a number of traits and show that it is possible to identify many of the underlying factors using straightforward techniques. Our method should have broad applications in yeast and can be extended to other organisms.

Indexed as

4-Nitroquinoline-1-oxideChromosome MappingCrosses, GeneticDiploidyDrug Resistance, FungalGene FrequencyGenotypeHaploidyMitochondriaMultifactorial InheritanceOligonucleotide Array Sequence AnalysisPhenotypePolymorphism, Single NucleotideQuantitative Trait LociQuinolonesSaccharomyces cerevisiae4-Nitroquinoline-1-oxide4-nitroquinolone-1-oxideQuinolones

Identifiers

PMID20393561
PMCPMC2862354

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.