Evidence map›Paper›PMID 20393109›Full record

ArticleInvestigative ophthalmology & visual science2010

Identification of the neuromuscular junction transcriptome of extraocular muscle by laser capture microdissection.

Caroline Ketterer, Ulrike Zeiger, Murat T Budak, Neal A Rubinstein, Tejvir S Khurana

Open access · hybridAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

  1. The Neuromuscular Junction: A Shared Vulnerability in Aging and Disease.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
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  9. Extraocular muscle function is impaired inThe Journal of general physiology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Caroline KettererDepartment of Cell and Developmental Biology, Pennsylvania Muscle Institute, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Ulrike Zeiger
Murat T Budak
Neal A Rubinstein
Tejvir S Khurana
University of Pennsylvania · US

Funding

Molecular Characterization of Extraocular Muscle (EOM)R01EY013862 · NEI · UNIVERSITY OF PENNSYLVANIA · PI KHURANA, TEJVIR S · 2004 to 2010
$2.8M
FUNCTIONAL RESPONSES OF EXTRAOCULAR EYE MUSCLES TO T3R01EY011779 · NEI · UNIVERSITY OF PENNSYLVANIA · PI RUBINSTEIN, NEAL A · 1998 to 2005
$1.7M
NEI NIH HHS EY011779NEI NIH HHS EY013862NEI NIH HHS R01 EY011779NEI NIH HHS R01 EY013862
6 · The paper itself

Abstract

purposeTo examine and characterize the profile of genes expressed at the synapses or neuromuscular junctions (NMJs) of extraocular muscles (EOMs) compared with those expressed at the tibialis anterior (TA).

methodsAdult rat eyeballs with rectus EOMs attached and TAs were dissected, snap frozen, serially sectioned, and stained for acetylcholinesterase (AChE) to identify the NMJs. Approximately 6000 NMJs for rectus EOM (EOMsyn), 6000 NMJs for TA (TAsyn), equal amounts of NMJ-free fiber regions (EOMfib, TAfib), and underlying myonuclei and RNAs were captured by laser capture microdissection (LCM). RNA was processed for microarray-based expression profiling. Expression profiles and interaction lists were generated for genes differentially expressed at synaptic and nonsynaptic regions of EOM (EOMsyn versus EOMfib) and TA (TAsyn versus TAfib). Profiles were validated by using real-time quantitative polymerase chain reaction (qPCR).

resultsThe regional transcriptomes associated with NMJs of EOMs and TAs were identified. Two hundred seventy-five genes were preferentially expressed in EOMsyn (compared with EOMfib), 230 in TAsyn (compared with TAfib), and 288 additional transcripts expressed in both synapses. Identified genes included novel genes as well as well-known, evolutionarily conserved synaptic markers (e.g., nicotinic acetylcholine receptor (AChR) alpha (Chrna) and epsilon (Chrne) subunits and nestin (Nes).

conclusionsTranscriptome level differences exist between EOM synaptic regions and TA synaptic regions. The definition of the synaptic transcriptome provides insight into the mechanism of formation and functioning of the unique synapses of EOM and their differential involvement in diseases noted in the EOM allotype.

Indexed as

Gene Expression ProfilingLasersAge FactorsAnimalsFemaleIntermediate Filament ProteinsMaleMicrodissectionMuscle Fibers, SkeletalMuscle, SkeletalNerve Tissue ProteinsNestinNeuromuscular JunctionOculomotor MusclesRatsReceptors, NicotinicIntermediate Filament ProteinsNerve Tissue ProteinsNes protein, ratNestinReceptors, Nicotinic

Identifiers

PMID20393109
PMCPMC2941174
OpenAlexW2135101419

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.