Evidence map›Paper›PMID 20392851›Full record

ArticleJournal of virology2010

Host factors associated with the Sindbis virus RNA-dependent RNA polymerase: role for G3BP1 and G3BP2 in virus replication.

Ileana M Cristea, Heather Rozjabek, Kelly R Molloy, Sophiya Karki, Laura L White, Charles M Rice, Michael P Rout, Brian T Chait, Margaret R MacDonald

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 113 citations in OpenAlex.

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  14. Viral evasion of PKR restriction by reprogramming cellular stress granules.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Article
  16. Molecular Virology of Chikungunya Virus.Current topics in microbiology and immunology · 2022
    Review
  17. Article
  18. Article
  19. Review
  20. Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Ileana M CristeaDepartment of Molecular Biology, Princeton University, Lewis Thomas Laboratory, Washington Road, Princeton, New Jersey 08544, USA.
Heather Rozjabek
Kelly R Molloy
Sophiya Karki
Laura L White
Charles M Rice
Michael P Rout
Brian T Chait
Margaret R MacDonald
Princeton University · USRockefeller University · USInstitut de Biologie Moléculaire et Cellulaire · FR

Funding

YNG1 PHD BINDING TO H3 3METHYL AT K4 PROMOTES TRANSCRIPTION AT TARGETED ORFSP41RR000862 · NCRR · ROCKEFELLER UNIVERSITY · PI FENYO, DAVID · 1985 to 2011
$16.1M
Proteomic Tools to Uncover the Role of Chromatin Remodeling in HIV-1 InfectionDP1DA026192 · NIDA · PRINCETON UNIVERSITY · PI CRISTEA, ILEANA M. · 2008 to 2012
$3.9M
Host factors in the alphavirus replication complexR01AI063233 · NIAID · ROCKEFELLER UNIVERSITY · PI MACDONALD, MARGARET R · 2005 to 2009
$1.6M
NCRR NIH HHS P41 RR000862NCRR NIH HHS RR00862NCRR NIH HHS RR02220NIAID NIH HHS AI063233NIAID NIH HHS R01 AI063233NIDA NIH HHS DP1 DA026192NIDA NIH HHS DP1DA026192
6 · The paper itself

Abstract

Sindbis virus (SINV) is the prototype member of the Alphavirus genus, whose members cause severe human diseases for which there is no specific treatment. To ascertain host factors important in the replication of the SINV RNA genome, we generated a SINV expressing nsP4, the viral RNA-dependent RNA polymerase, with an in-frame 3xFlag epitope tag. Proteomic analysis of nsP4-containing complexes isolated from cells infected with the tagged virus revealed 29 associated host proteins. Of these, 10 proteins were associated only at a later time of infection (12 h), 14 were associated both early and late, and five were isolated only at the earlier time (6 h postinfection). These results demonstrate the dynamic nature of the virus-host interaction that occurs over the course of infection and suggest that different host proteins may be required for the multiple functions carried out by nsP4. Two related proteins found in association with nsP4 at both times of infection, GTPase-activating protein (SH3 domain) binding protein 1 (G3BP1) and G3BP2 were also previously identified as associated with SINV nsP2 and nsP3. We demonstrate a likely overlapping role for these host factors in limiting SINV replication events. The present study also identifies 10 host factors associated with nsP4 6 h after infection that were not found to be associated with nsP2 or nsP3. These factors are candidates for playing important roles in the RNA replication process. Identifying host factors essential for replication should lead to new strategies to interrupt alphavirus replication.

Indexed as

Host-Pathogen InteractionsProtein Interaction MappingVirus ReplicationAnimalsCarrier ProteinsCell LineCricetinaeProtein BindingRatsRNA-Dependent RNA PolymeraseSindbis VirusTime FactorsViral ProteinsCarrier ProteinsRNA-Dependent RNA PolymeraseViral Proteins

Identifiers

PMID20392851
PMCPMC2903289
OpenAlexW2110230680

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.