Evidence map›Paper›PMID 20389282›Full record

ArticleThe EMBO journal2010

Crystal structure of the yeast Sac1: implications for its phosphoinositide phosphatase function.

Andrew Manford, Tian Xia, Ajay Kumar Saxena, Christopher Stefan, Fenghua Hu, Scott D Emr, Yuxin Mao

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
  2. Protein family FAM241 in human and mouse.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
    Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. TheeLife · 2022
    Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Cellular homeostasis in theMolecular biology of the cell · 2020
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Andrew ManfordDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.
Tian Xia
Ajay Kumar Saxena
Christopher Stefan
Fenghua Hu
Scott D Emr
Yuxin Mao
Cornell University · US

Funding

ZINC FINGER-DNA COMPLEXP41RR001646 · NCRR · CORNELL UNIVERSITY ITHACA · PI CINGOLANI, GINO · 1985 to 2011
$23.8M
NCRR NIH HHS P41 RR001646NCRR NIH HHS RR-01646NIGMS NIH HHS DMR-0225180
6 · The paper itself

Abstract

Sac family phosphoinositide (PI) phosphatases are an essential family of CX(5)R(T/S)-based enzymes, involved in numerous aspects of cellular function such as PI homeostasis, cellular signalling, and membrane trafficking. Genetic deletions of several Sac family members result in lethality in animal models and mutations of the Sac3 gene have been found in human hereditary diseases. In this study, we report the crystal structure of a founding member of this family, the Sac phosphatase domain of yeast Sac1. The 2.0 A resolution structure shows that the Sac domain comprises of two closely packed sub-domains, a novel N-terminal sub-domain and the PI phosphatase catalytic sub-domain. The structure further shows a striking conformation of the catalytic P-loop and a large positively charged groove at the catalytic site. These findings suggest an unusual mechanism for its dephosphorylation function. Homology structural modeling of human Fig4/Sac3 allows the mapping of several disease-related mutations and provides a framework for the understanding of the molecular mechanisms of human diseases.

Indexed as

Amino Acid SequenceCatalytic DomainCrystallography, X-RayFlavoproteinsHumansModels, MolecularMolecular Sequence DataMutationMutation, MissensePhosphoric Monoester HydrolasesProtein ConformationProtein FoldingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence AlignmentStructural Homology, ProteinFIG4 protein, humanFlavoproteinsPhosphoric Monoester HydrolasesSAC1 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID20389282
PMCPMC2876947
OpenAlexW2158633487

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.