Evidence map›Paper›PMID 20388839›Full record

ArticlePhysiological genomics2010

High-resolution cardiovascular function confirms functional orthology of myocardial contractility pathways in zebrafish.

Jordan T Shin, Eugene V Pomerantsev, John D Mably, Calum A MacRae

Open access · greenAbstract read
In one paragraph

Article in Physiological genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it, 87 citations in OpenAlex.

  1. Pooled it
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  8. The Role ofCirculation research · 2024
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  12. Review
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  17. Review
  18. Effect of Water-Pipe Smoking on the Normal Development of Zebrafish.International journal of environmental research and public health · 2021
    Article
  19. Circulation research · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jordan T ShinCardiology Division, Massachusetts General Hospital and Harvard Medical School, Cardiovascular Research Center, 149 13th Street, Charlestown, MA 02129, USA. jshin1@partners.org
Eugene V Pomerantsev
John D Mably
Calum A MacRae
Massachusetts General Hospital · USBoston Children's Hospital · US

Funding

Zebrafish Assays Predictive for Cardiotoxicity(RMI)R21GM075946 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI MACRAE, CALUM A. · 2005 to 2008
$1.6M
Development of a High-throughput Integrated In Vivo Heart Failure AssayR01HL109264 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI MACRAE, CALUM A. · 2012 to 2014
$1.3M
Functional evaluation of GWAS loci for cardiovascular intermediate phenotypesR21HL098938 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI MACRAE, CALUM A. · 2009 to 2010
$1.1M
The role of BMPR2 in blood vesel development and patterning in vivoK08HL085280 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI SHIN, JORDAN T · 2008 to 2012
$688k
NHLBI NIH HHS HL-085280NHLBI NIH HHS K08 HL085280NHLBI NIH HHS R01 HL109264NHLBI NIH HHS R21 HL098938NIGMS NIH HHS GM-075946
6 · The paper itself

Abstract

Phenotype-driven screens in larval zebrafish have transformed our understanding of the molecular basis of cardiovascular development. Screens to define the genetic determinants of physiological phenotypes have been slow to materialize as a result of the limited number of validated in vivo assays with relevant dynamic range. To enable rigorous assessment of cardiovascular physiology in living zebrafish embryos, we developed a suite of software tools for the analysis of high-speed video microscopic images and validated these, using established cardiomyopathy models in zebrafish as well as modulation of the nitric oxide (NO) pathway. Quantitative analysis in wild-type fish exposed to NO or in a zebrafish model of dilated cardiomyopathy demonstrated that these tools detect significant differences in ventricular chamber size, ventricular performance, and aortic flow velocity in zebrafish embryos across a large dynamic range. These methods also were able to establish the effects of the classic pharmacological agents isoproterenol, ouabain, and verapamil on cardiovascular physiology in zebrafish embryos. Sequence conservation between zebrafish and mammals of key amino acids in the pharmacological targets of these agents correlated with the functional orthology of the physiological response. These data provide evidence that the quantitative evaluation of subtle physiological differences in zebrafish can be accomplished at a resolution and with a dynamic range comparable to those achieved in mammals and provides a mechanism for genetic and small-molecule dissection of functional pathways in this model organism.

Indexed as

AlgorithmsAnimalsCardiovascular Physiological PhenomenaEmbryo, NonmammalianHeartModels, AnimalMyocardial ContractionMyocardiumPhenotypeZebrafish

Identifiers

PMID20388839
PMCPMC3032279
OpenAlexW2164654911

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.