Evidence map›Paper›PMID 20387139›Full record

ReviewMethods in molecular biology (Clifton, N.J.)2010

RNA modifications: a mechanism that modulates gene expression.

John Karijolich, Athena Kantartzis, Yi-Tao Yu

Abstract readReview
In one paragraph

Review in Methods in molecular biology (Clifton, N.J.), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. MRT-ModSeq - Rapid detection of RNA modifications with MarathonRT.bioRxiv : the preprint server for biology · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Functional diversity of small nucleolar RNAs.Nucleic acids research · 2020
    Article
  16. The Role of Noncoding RNA Pseudouridylation in Nuclear Gene Expression Events.Frontiers in bioengineering and biotechnology · 2018
    Review
  17. Review
  18. RNA (New York, N.Y.) · 2017
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

John KarijolichDepartment of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, USA.
Athena Kantartzis
Yi-Tao Yu
University of Rochester Medical Center · US

Funding

Training in Cellular, Biochemical and Molecular SciencesT32GM068411 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 2005 to 2019
$3.9M
Spliceosomal snRNA modification in Xenopus oocytesR01GM062937 · NIGMS · UNIVERSITY OF ROCHESTER · PI YU, YI-TAO · 2001 to 2009
$2.3M
NIGMS NIH HHS GM068411NIGMS NIH HHS GM62937NIGMS NIH HHS R01 GM062937NIGMS NIH HHS T32 GM068411
6 · The paper itself

Abstract

Accuracy in the flow of genetic information from DNA to protein, or gene expression, is essential to the viability of an organisms. Pre-mRNA splicing and protein translation are two major steps in eukaryotic gene expression that necessitate the production of accurate gene products. Both processes occur in large complexes, consisting of both proteins and noncoding RNAs. Interestingly, the RNA components contain a large number of posttranscriptional modifications, including 2'-O-methylation and pseudouridylation, which are functionally important. In this chapter, we highlight the functional aspects of the modifications of spliceosomal snRNA and rRNA and provide a framework for understanding how posttranscriptional modifications are capable of influencing gene expression.

Indexed as

AnimalsBase SequenceHumansMolecular Sequence DataRNA Processing, Post-TranscriptionalRNA, RibosomalRNA, Small NuclearRNA SplicingSpliceosomesRNA, RibosomalRNA, Small Nuclear

Identifiers

PMID20387139
PMCPMC4154353
OpenAlexW2277180634

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.