Evidence map›Paper›PMID 20387063›Full record

ArticleImmunogenetics2010

A novel CD93 polymorphism in non-obese diabetic (NOD) and NZB/W F1 mice is linked to a CD4+ iNKT cell deficient state.

Ghazal Zekavat, Raha Mozaffari, Vanessa J Arias, Susan Y Rostami, Armen Badkerhanian, Andrea J Tenner, Kim E Nichols, Ali Naji, Hooman Noorchashm

Open access · hybridAbstract read
In one paragraph

Article in Immunogenetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Ghazal ZekavatHarrison Department of Surgical Research, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.
Raha Mozaffari
Vanessa J Arias
Susan Y Rostami
Armen Badkerhanian
Andrea J Tenner
Kim E Nichols
Ali Naji
Hooman Noorchashm
University of Pennsylvania · USUniversity of California, Irvine · USChildren's Hospital of Philadelphia · US

Funding

INTERACTION OF CLQ ON PHAGOCYTIC CELLSR01AI041090 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TENNER, ANDREA JOAN · 1996 to 2010
$3.1M
T Cell Homeostasis in Autoimmune DiabetesK08DK064603 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI NOORCHASHM, HOOMAN · 2006 to 2007
$265k
B Cell Homeostasis in NOD DiabetogenesisR03DK080286 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI NOORCHASHM, HOOMAN · 2008 to 2009
$158k
NIAID NIH HHS AI-41090NIAID NIH HHS R01 AI041090NIDDK NIH HHS K08 DK064603NIDDK NIH HHS K08-DK064603NIDDK NIH HHS R03 DK080286NIDDK NIH HHS R03-DK080286
6 · The paper itself

Abstract

In the present study, we characterize a polymorphism in the CD93 molecule, originally identified as the receptor for the C1q complement component (i.e., C1qRp, or AA4.1) in non-obese diabetic (NOD) mice. This allele carries a coding polymorphism in the first epidermal growth factor-like domain of CD93, which results in an amino acid substitution from Asn-->His at position 264. This polymorphism does not appear to influence protein translation or ecto-domain cleavage, as CD93 is detectable in bone-marrow-derived macrophage and B-cell precursor lysates and in soluble form in the serum. The NOD CD93 isoform causes a phenotypic aberrancy in the early B-cell developmental stages (i.e., pro-, pre-, immature, and transitional), likely related to a conformational variation. Interestingly, the NZB/W F1 strain, which serves as a murine model of Lupus, also expresses an identical CD93 sequence polymorphism. Cd93 is located within the NOD Idd13 locus and is also tightly linked to the NZB/W F1 Wbw1 and Nkt2 disease susceptibility loci, which are thought to regulate natural killer T (NKT) cell homeostasis. Consistent with this genetic linkage, we found B6 CD93(-/-) and B6.NOD(Idd13) mice to be susceptible to a profound CD4(+) NKT cell deficient state. These data suggest that Cd93 may be an autoimmune susceptibility gene residing within the Idd13 locus, which plays a role in regulating absolute numbers of CD4(+) NKT cells.

Indexed as

Polymorphism, GeneticAnimalsBase SequenceCD4-Positive T-LymphocytesChromosome MappingLymphocyte CountMembrane GlycoproteinsMiceMice, Inbred BALB CMice, Inbred C57BLMice, Inbred NODMice, Inbred NZBMolecular Sequence DataNatural Killer T-CellsReceptors, Complementcomplement 1q receptorMembrane GlycoproteinsReceptors, Complement

Identifiers

PMID20387063
PMCPMC2875467
OpenAlexW2154104912

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.