Evidence map›Paper›PMID 20387039›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2010

Gene regulation during cold stress acclimation in plants.

Viswanathan Chinnusamy, Jian-Kang Zhu, Ramanjulu Sunkar

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 165 papers.

0numbers the graph read from it
0cells of the map it votes in
165citing papers in PubMed
38.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

165 citing papers in PubMed, 440 citations in OpenAlex.

  1. Review
  2. Jasmonic Acid Signals Involved inCurrent issues in molecular biology · 2025
    Article
  3. Article
  4. Article
  5. A Mass Spectrometry Approach Reveals Fatty Acid Isomerism in Tomato Cold Tolerance.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Comparative genomic profiling ofFrontiers in plant science · 2024
    Article
  14. Article
  15. Article
  16. Functional Analysis ofPlants (Basel, Switzerland) · 2023
    Article
  17. Review
  18. Transcription Factor VvDREB2A fromInternational journal of molecular sciences · 2023
    Article
  19. Transcriptome analysis revealed molecular basis of cold response inMolecular breeding : new strategies in plant improvement · 2023
    Article
  20. Review

105 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Viswanathan ChinnusamyDepartment of Botany and Plant Sciences, University of California, Riverside, CA, USA.
Jian-Kang Zhu
Ramanjulu Sunkar
University of California, Riverside · USOklahoma State University · US

Funding

CALCIUM SIGNALING--INTRACELL ION HOMEOSTASIS REGULATIONR01GM059138 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ZHU, JIAN-KANG · 1999 to 2015
$4.4M
NIGMS NIH HHS R01 GM059138
6 · The paper itself

Abstract

Cold stress adversely affects plant growth and development and thus limits crop productivity. Diverse plant species tolerate cold stress to a varying degree, which depends on reprogramming gene expression to modify their physiology, metabolism, and growth. Cold signal in plants is transmitted to activate CBF-dependent (C-repeat/drought-responsive element binding factor-dependent) and CBF-independent transcriptional pathway, of which CBF-dependent pathway activates CBF regulon. CBF transcription factor genes are induced by the constitutively expressed ICE1 (inducer of CBF expression 1) by binding to the CBF promoter. ICE1-CBF cold response pathway is conserved in diverse plant species. Transgenic analysis in different plant species revealed that cold tolerance can be significantly enhanced by genetic engineering CBF pathway. Posttranscriptional regulation at pre-mRNA processing and export from nucleus plays a role in cold acclimation. Small noncoding RNAs, namely micro-RNAs (miRNAs) and small interfering RNAs (siRNAs), are emerging as key players of posttranscriptional gene silencing. Cold stress-regulated miRNAs have been identified in Arabidopsis and rice. In this chapter, recent advances on cold stress signaling and tolerance are highlighted.

Indexed as

Cold TemperatureGene Expression Regulation, PlantAcclimatizationPlantsSecond Messenger SystemsSignal TransductionStress, PhysiologicalTranscription, Genetic

Identifiers

PMID20387039
PMCPMC3064467
OpenAlexW2121187620

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.