Evidence map›Paper›PMID 20386693›Full record

ArticlePloS one2010

Characterization of a heme-regulated non-coding RNA encoded by the prrF locus of Pseudomonas aeruginosa.

Amanda G Oglesby-Sherrouse, Michael L Vasil

Abstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Article
  2. Review
  3. Calprotectin protectsmSystems · 2025
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  6. Relationship between Pyochelin andInternational journal of molecular sciences · 2024
    Review
  7. The small RNA PrrH aggravatesMicrobiology spectrum · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Specific and Global RNA Regulators inInternational journal of molecular sciences · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Post-transcriptional regulation of theThe Journal of biological chemistry · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Amanda G Oglesby-SherrouseDepartment of Microbiology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States of America. Amanda.Oglesby@ucdenver.edu
Michael L Vasil

Funding

Iron and O2 in the Regulation of P. aeruginosa VirulenceR37AI015940 · NIAID · UNIVERSITY OF COLORADO DENVER · PI VASIL, MICHAEL L. · 2003 to 2012
$5.1M
IRON, O2 AND ITS ELEMENTS IN EXOTOXIN A EXPRESSIONR01AI015940 · NIAID · UNIVERSITY OF COLORADO DENVER · PI VASIL, MICHAEL L. · 1985 to 2003
$1.2M
NIAID NIH HHS R01 AI015940NIAID NIH HHS R37 AI015940NIAID NIH HHS R37-NIH AI15940
6 · The paper itself

Abstract

Pseudomonas aeruginosa, an opportunistic pathogen, requires iron for virulence and can obtain this nutrient via the acquisition of heme, an abundant source of iron in the human body. A surplus of either iron or heme can lead to oxidative stress; thus, the Fur (ferric uptake regulator) protein blocks expression of genes required for iron and heme uptake in iron-replete environments. Fur also represses expression of two nearly identical genes encoding the 116- and 114-nucleotide (nt) long PrrF1 and PrrF2 RNAs, respectively. While other Pseudomonads encode for the two PrrF RNAs at separate genomic loci, PrrF1 and PrrF2 are encoded in tandem in all sequenced strains of P. aeruginosa. In this report we characterize a third longer transcript encoded by the prrF locus, PrrH, which is repressed by heme as well as iron. We mapped the PrrH RNA in PA01 using 5' rapid amplification of cDNA ends (RACE) and northern analysis, demonstrating the PrrH RNA is 325 nt in length. Accordingly, transcription of PrrH initiates at the 5' end of prrF1, proceeds through the prrF1 terminator and prrF1-prrF2 intergenic sequence (95 nt), and terminates at the 3' end of the prrF2 gene. We also present evidence that repression of PrrH by heme causes increased expression of previously identified PrrF-regulated genes, as well as newly identified iron- and heme-activated genes. Thus, the PrrH RNA appears to impart a novel heme regulatory mechanism to P. aeruginosa.

Indexed as

Gene Expression Regulation, BacterialRNA, UntranslatedGenetic LociHemeIronPseudomonas aeruginosaRNA, BacterialHemeIronRNA, BacterialRNA, Untranslated

Identifiers

PMID20386693
PMCPMC2851614

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.