Evidence map›Paper›PMID 20385594›Full record

ArticleNucleic acids research2010

BAC TG-EMBED: one-step method for high-level, copy-number-dependent, position-independent transgene expression.

Qian Bian, Andrew S Belmont

Abstract read
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  5. Altered Baseline and Nicotine-Mediated Behavioral and Cholinergic Profiles in ChAT-Cre Mouse Lines.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Qian BianCenter for Biophysics and Computational Biology, University of Illinois, Urbana, IL, USA.
Andrew S Belmont

Funding

CHROMATIN DOMAIN STRUCTURE/FUNCTIONR01GM058460 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI BELMONT, ANDREW STEVEN · 1999 to 2025
$8.0M
LARGE SCALE CHROMATIN STRUCTURE/FUNCTIONR01GM042516 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI BELMONT, ANDREW STEVEN · 1995 to 2007
$1.9M
NUCLEAR AND CHROMOSOME DECONDENSATION DURING G1-SR29GM042516 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI BELMONT, ANDREW S. · 1990 to 1994
–
NIGMS NIH HHS GM42516NIGMS NIH HHS GM58460NIGMS NIH HHS R01 GM058460
6 · The paper itself

Abstract

Chromosome position effects combined with transgene silencing of multi-copy plasmid insertions lead to highly variable and usually quite low expression levels of mini-genes integrated into mammalian chromosomes. Together, these effects greatly complicate obtaining high-level expression of therapeutic proteins in mammalian cells or reproducible expression of individual or multiple transgenes. Here, we report a simple, one-step procedure for obtaining high-level, reproducible mini-gene expression in mammalian cells. By inserting mini-genes at different locations within a BAC containing the DHFR housekeeping gene locus, we obtain copy-number-dependent, position-independent expression with chromosomal insertions of one to several hundred BAC copies. These multi-copy DHFR BAC insertions adopt similar large-scale chromatin conformations independent of their chromosome integration site, including insertions within centromeric heterochromatin. Prevention of chromosome position effects, therefore, may be the result of embedding the mini-gene within the BAC-specific large-scale chromatin structure. The expression of reporter mini-genes can be stably maintained during continuous, long-term culture in the presence of drug selection. Finally, we show that this method is extendable to reproducible, high-level expression of multiple mini-genes, providing improved expression of both single and multiple transgenes.

Indexed as

Chromosomal Position EffectsChromosomes, Artificial, BacterialTransgenesAnimalsChromatinChromosomes, MammalianGene DosageGene ExpressionGenes, ReporterMiceNIH 3T3 CellsTetrahydrofolate DehydrogenaseChromatinTetrahydrofolate Dehydrogenase

Identifiers

PMID20385594
PMCPMC2887973

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.