Evidence map›Paper›PMID 20383005›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2010

X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia.

Andrey Galkin, Liudmila Kulakova, Rui Wu, Theodore E Nash, Debra Dunaway-Mariano, Osnat Herzberg

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  3. TheJournal of microbiology and biotechnology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Andrey GalkinW. M. Keck Laboratory for Structural Biology, Center for Advanced Research in Biotechnology, University of Maryland Biotechnology Institute, Rockville, Maryland, USA.
Liudmila Kulakova
Rui Wu
Theodore E Nash
Debra Dunaway-Mariano
Osnat Herzberg
Biotechnology Institute · USUniversity of New Mexico · USNational Institute of Allergy and Infectious Diseases · US

Funding

Giardia drug targets: Structure, function and inhibitorsR01AI059733 · NIAID · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI HERZBERG, OSNAT · 2005 to 2009
$2.9M
Studies of Gastrointestinal Parasitic DiseasesZIAAI000161 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI NASH, THEODORE · 2009 to 2016
$1.8M
NIAID NIH HHS R01 AI059733
6 · The paper itself

Abstract

Carbamate kinase catalyzes the reversible conversion of carbamoyl phosphate and ADP to ATP and ammonium carbamate, which is hydrolyzed to ammonia and carbonate. The three-dimensional structure of carbamate kinase from the human parasite Giardia lamblia (glCK) has been determined at 3 A resolution. The crystals belonged to the monoclinic space group P2(1), with unit-cell parameters a = 69.77, b = 85.41, c = 102.1 A, beta = 106.8 degrees . The structure was refined to a final R factor of 0.227. The essentiality of glCK together with its absence in humans makes the enzyme an attractive candidate for anti-Giardia drug development. Steady-state kinetic rate constants have been determined. The k(cat) for ATP formation is 319 +/- 9 s(-1). The K(m) values for carbamoyl phosphate and ADP are 85 +/- 6 and 70 +/- 5 microM, respectively. The structure suggests that three invariant lysine residues (Lys131, Lys216 and Lys278) may be involved in the binding of substrates and phosphoryl transfer. The structure of glCK reveals that a glycerol molecule binds in the likely carbamoyl phosphate-binding site.

Indexed as

Carbamyl PhosphateCatalytic DomainCrystallography, X-RayGiardia lambliaGlycerolModels, MolecularPhosphotransferases (Carboxyl Group Acceptor)Protein Structure, QuaternaryStructural Homology, Proteincarbamate kinaseCarbamyl PhosphateGlycerolPhosphotransferases (Carboxyl Group Acceptor)

Identifiers

PMID20383005
PMCPMC2852327
OpenAlexW1978910586

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.