Evidence map›Paper›PMID 20382739›Full record

ArticleThe Journal of biological chemistry2010

Bax forms an oligomer via separate, yet interdependent, surfaces.

Zhi Zhang, Weijia Zhu, Suzanne M Lapolla, Yiwei Miao, Yuanlong Shao, Mina Falcone, Doug Boreham, Nicole McFarlane, Jingzhen Ding, Arthur E Johnson and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 77 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Lipids glue BAK dimers together.Nature structural & molecular biology · 2020
    Article
  10. BAX, BAK, and BOK: A Coming of Age for the BCL-2 Family Effector Proteins.Cold Spring Harbor perspectives in biology · 2020
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Pore formation by dimeric Bak and Bax: an unusual pore?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  17. BAK α6 permits activation by BH3-only proteins and homooligomerization via the canonical hydrophobic groove.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  18. Article
  19. Article
  20. Bax transmembrane domain interacts with prosurvival Bcl-2 proteins in biological membranes.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Zhi ZhangDepartment of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73126, USA.
Weijia Zhu
Suzanne M Lapolla
Yiwei Miao
Yuanlong Shao
Mina Falcone
Doug Boreham
Nicole McFarlane
Jingzhen Ding
Arthur E Johnson
Xuejun C Zhang
David W Andrews
Jialing Lin
McMaster University · CAUniversity of Oklahoma Health Sciences Center · USTexas A&M University System · USOklahoma Medical Research Foundation · US

Funding

THE INTERACTION OF AA-TRNA WITH EF-TU AND RIBOSOMESR01GM026494 · NIGMS · UNIVERSITY OF OKLAHOMA NORMAN · PI JOHNSON, ARTHUR E · 1985 to 2011
$3.7M
Structure-Function of Bcl-2 Related Apoptosis Regulators in MembranesR01GM062964 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI LIN, JIALING · 2001 to 2014
$3.3M
CIHR FRN 12517NIGMS NIH HHS GM062964NIGMS NIH HHS R01 GM026494NIGMS NIH HHS R01 GM062964
6 · The paper itself

Abstract

Interactions of Bcl-2 family proteins regulate permeability of the mitochondrial outer membrane and apoptosis. In particular, Bax forms an oligomer that permeabilizes the membrane. To map the interface of the Bax oligomer we used Triton X-100 as a membrane surrogate and performed site-specific photocross-linking. Bax-specific adducts were formed through photo-reactive probes at multiple sites that can be grouped into two surfaces. The first surface overlaps with the BH1-3 groove formed by Bcl-2 Homology motif 1, 2, and 3; the second surface is a rear pocket located on the opposite side of the protein from the BH1-3 groove. Further cross-linking experiments using Bax BH3 peptides and mutants demonstrated that the two surfaces interact with their counterparts in neighboring proteins to form two separated interfaces and that interaction at the BH1-3 groove primes the rear pocket for further interaction. Therefore, Bax oligomerization proceeds through a series of interactions that occur at separate, yet allosterically, coupled interfaces.

Indexed as

ApoptosisAllosteric SiteAmino Acid Motifsbcl-2-Associated X ProteinBiochemistryCross-Linking ReagentsDetergentsHumansMutationOctoxynolPeptidesPlasmidsProtein BindingProtein Structure, TertiaryProto-Oncogene Proteins c-bcl-2bcl-2-Associated X ProteinCross-Linking ReagentsDetergentsOctoxynolPeptidesProto-Oncogene Proteins c-bcl-2

Identifiers

PMID20382739
PMCPMC2878526
OpenAlexW1965410265

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.