Evidence map›Paper›PMID 20377265›Full record

ArticleThe journal of physical chemistry. A2010

Steric, quantum, and electrostatic effects on S(N)2 reaction barriers in gas phase.

Shubin Liu, Hao Hu, Lee G Pedersen

Abstract read
In one paragraph

Article in The journal of physical chemistry. A, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 101 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. A real space picture of the role of steric effects in SJournal of computational chemistry · 2022
    Article
  5. Article
  6. Article
  7. Theoretical Study of O-CHACS omega · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Nucleophilic Substitution (SChemphyschem : a European journal of chemical physics and physical chemistry · 2018
    Review
  13. An interacting quantum atom study of model SJournal of computational chemistry · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Shubin LiuResearch Computing Center, University of North Carolina, Chapel Hill, North Carolina, 27599-3420, USA. shubin@email.unc.edu
Hao Hu
Lee G Pedersen
National Institute of Environmental Health Sciences · USUniversity of Hong Kong · HKUniversity of North Carolina at Chapel Hill · US

Funding

THE ROLE OF THE VITAMIN K CYCLE IN COAGULATIONP01HL006350 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI STAFFORD, DARREL W · 1985 to 2013
$17.5M
Macromolecular ModelingZIAES043010 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI PEDERSEN, LEE · 2009 to 2011
$1.3M
Intramural NIH HHSNHLBI NIH HHS HL-06350NHLBI NIH HHS P01 HL006350
6 · The paper itself

Abstract

Biomolecular nucleophilic substitution reactions, S(N)2, are fundamental and commonplace in chemistry. It is the well-documented experimental finding in the literature that vicinal substitution with bulkier groups near the reaction center significantly slows the reaction due to steric hindrance, but theoretical understanding in the quantitative manner about factors dictating the S(N)2 reaction barrier height is still controversial. In this work, employing the new quantification approach that we recently proposed for the steric effect from the density functional theory framework, we investigate the relative contribution of three independent effects-steric, electrostatic, and quantum-to the S(N)2 barrier heights in gas phase for substituted methyl halide systems, R(1)R(2)R(3)CX, reacting with the fluorine anion, where R(1), R(2), and R(3) denote substituting groups and X = F or Cl. We found that in accordance with the experimental finding, for these systems, the steric effect dominates the transition state barrier, contributing positively to barrier heights, but this contribution is largely compensated by the negative, stabilizing contribution from the quantum effect due to the exchange-correlation interactions. Moreover, we find that it is the component from the electrostatic effect that is linearly correlated with the S(N)2 barrier height for the systems investigated in the present study. In addition, we compared our approach with the conventional method of energy decomposition in density functional theory as well as examined the steric effect from the wave function theory for these systems via natural bond orbital analysis.

Indexed as

Quantum TheoryStatic ElectricityGasesMolecular StructurePhase TransitionThermodynamicsGases

Identifiers

PMID20377265
PMCPMC2865848
OpenAlexW2039161646

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.