Evidence map›Paper›PMID 20376438›Full record

ArticleImmunogenetics2010

Comparative genomic analysis of mammalian NKG2D ligand family genes provides insights into their origin and evolution.

Mizuho Kondo, Takako Maruoka, Noriyuki Otsuka, Jun Kasamatsu, Kazunori Fugo, Naoto Hanzawa, Masanori Kasahara

Erratum issuedAbstract readComparative Study
PubMed Publisher
In one paragraph

Article in Immunogenetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Diversity of ULBP5 in Old-World monkeys (Cercopithecidae) and divergence of the ULBP gene family in primates.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2018
    Article
  7. Anti-NKG2D mAb: A New Treatment for Crohn's Disease?International journal of molecular sciences · 2017
    Review
  8. Article
  9. Article
  10. Article
  11. Genome of the Chinese tree shrew.Nature communications · 2013
    Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

  • Erratum issued
  • Erratum issued
5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Mizuho KondoDepartment of Pathology, Hokkaido University Graduate School of Medicine, North-15 West-7, Sapporo, 060-8638, Japan.
Takako Maruoka
Noriyuki Otsuka
Jun Kasamatsu
Kazunori Fugo
Naoto Hanzawa
Masanori Kasahara
Hokkaido University · JPYamagata University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NKG2D is a major activating receptor of natural killer cells. Its ligands are major histocompatibility complex (MHC) class I-like molecules whose expression is induced by cellular stresses such as infections and tumorigenesis. Humans have two families of NKG2D ligands (NKG2DL): MHC class I-related chains (MIC) encoded in the MHC and UL16-binding proteins (ULBP) encoded outside the MHC. By contrast, mice have only the latter family of ligands; instead, they have non-MHC-encoded MILL molecules that are closely related to MIC, but do not function as NKG2DL. To gain insights into the origin and evolution of MIC, ULBP, and MILL gene families, we conducted comparative genomic analysis of NKG2DL family genes in five mammalian species. In the opossum MHC, we identified a ULBP-like gene adjacent to a previously described MIC-like gene, suggesting that ULBP genes were originally encoded in the MHC. The opossum genome also contained a transcribed MILL-like gene in a region syntenic to the rodent regions encoding MILL molecules. These observations indicate that MIC-, ULBP-, and MILL-like genes emerged before the divergence of placental and marsupial mammals. Comparison of the human, cattle, rat, mouse, and opossum genomes indicates that after emigration from the MHC, ULBP genes underwent extensive duplications in each species. In mice, some of the ULBP genes appear to have been translocated telomerically on the same chromosome, forming a major cluster of existent NKG2DL genes.

Indexed as

Evolution, MolecularGenomeAmino Acid SequenceAnimalsCattleComputational BiologyGPI-Linked ProteinsGrowth Differentiation Factor 15Histocompatibility Antigens Class IHumansIntracellular Signaling Peptides and ProteinsLigandsMammalsMembrane GlycoproteinsMembrane ProteinsMiceGDF15 protein, humanGPI-Linked ProteinsGrowth Differentiation Factor 15Histocompatibility Antigens Class IIntracellular Signaling Peptides and ProteinsLigandsMembrane GlycoproteinsMembrane ProteinsMill1 protein, mouseNK Cell Lectin-Like Receptor Subfamily DULBP1 protein, human

Identifiers

PMID20376438
OpenAlexW2054378757

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.