Evidence map›Paper›PMID 20376207›Full record

ArticleInternational journal of biological sciences2010

The ulcerative colitis marker protein WAFL interacts with accessory proteins in endocytosis.

You Fu Pan, Ing-Marie Viklund, Heng Hang Tsai, Sven Pettersson, Ichiro N Maruyama

Open access · goldAbstract read
In one paragraph

Article in International journal of biological sciences, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

You Fu PanGenome Institute of Singapore, Singapore.
Ing-Marie Viklund
Heng Hang Tsai
Sven Pettersson
Ichiro N Maruyama
Genome Institute of Singapore · SGKarolinska Institutet · SEOkinawa Institute of Science and Technology Graduate University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ulcerative colitis (UC) is one of the major forms of inflammatory bowel disease with unknown cause. A molecular marker, WAFL, has recently been found to be up-regulated in the inflamed colonic mucosa of UC patients. Towards understanding biological function of WAFL, we analyzed proteins interacting with WAFL in HEK-293 cells by immunoprecipitation and mass spectrometry. Among four proteins found to specifically interact with WAFL, both KIAA0196 and KIAA1033 bind to alpha-appendage of the adaptor protein complex 2 (AP2), which acts as an interaction hub for accessory proteins in endocytosis mediated by clathrin-coated vesicle (CCV). The specific interaction between WAFL and KIAA0196 was also confirmed in human colorectal carcinoma HCT-116 cells by co-immunoprecipitation with specific antibodies. Meta-analyses of the databases of expressed genes suggest that the three genes are co-expressed in many tissues and cell types, and that their molecular function may be classified in the category of 'membrane traffic protein'. Therefore, these results suggest that WAFL may play an important role in endocytosis and subsequent membrane trafficking by interacting with AP2 through KIAA0196 and KIAA1033.

Indexed as

EndocytosisCell LineCell Line, TumorChromatography, LiquidColitis, UlcerativeColorectal NeoplasmsHumansMacrophagesMass SpectrometryModels, BiologicalProteinsProteomicsTacrolimus Binding ProteinsTranscription Factor AP-2Wiskott-Aldrich Syndrome ProteinWiskott-Aldrich Syndrome Protein FamilyFKBP15 protein, humanProteinsTacrolimus Binding ProteinsTranscription Factor AP-2WASHC5 protein, humanWAS protein, humanWiskott-Aldrich Syndrome ProteinWiskott-Aldrich Syndrome Protein FamilyInflammatory bowel diseaseKIAA0196/strumpellinKIAA1033ProteomicsWAFL/FKBP15/FKBP133/KIAA0674Wiskott-Aldrich syndrome protein

Identifiers

PMID20376207
PMCPMC2850539
OpenAlexW2122247043

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.