Evidence map›Paper›PMID 20375326›Full record

ArticleInvestigative ophthalmology & visual science2010

Pathway-focused arrays reveal increased matrix metalloproteinase-7 (matrilysin) transcription in trachomatous trichiasis.

Martin J Holland, David Jeffries, Michael Pattison, Gerit Korr, Alevtina Gall, Hassan Joof, Ahmed Manjang, Matthew J Burton, David C W Mabey, Robin L Bailey

Open access · hybridAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.5field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 27 citations in OpenAlex.

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  7. Immunofibrogenic Gene Expression Patterns in Tanzanian Children with OcularFrontiers in cellular and infection microbiology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Martin J HollandDepartment of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, UK. martin.holland@lshtm.ac.uk
David Jeffries
Michael Pattison
Gerit Korr
Alevtina Gall
Hassan Joof
Ahmed Manjang
Matthew J Burton
David C W Mabey
Robin L Bailey
London School of Hygiene & Tropical Medicine · GB

Funding

Medical Research Council MC_U190085851Medical Research Council U.1900 (85851)Wellcome Trust 079246Wellcome Trust 079246/Z/06/Z
6 · The paper itself

Abstract

purposeSeveral genes that are associated with protection from or susceptibility to trachomatous trichiasis (TT) have been identified through genetic association studies. Yet there have been few studies in which gene expression profiles were assessed in TT cases and disease-free controls. The purpose was to identify genes that are differentially expressed in the upper tarsal conjunctiva of subjects with TT.

methodPathway-focused gene arrays were used to screen conjunctival RNA expression of 226 gene transcripts of interest. The screening was followed by validation of differentially expressed genes by qRT-PCR on an independent set of samples. Three different techniques were then used to test for quantitative differences in the recovered conjunctival protein fraction.

resultsFocused arrays identified a set of 13 differentially expressed genes. Validation by qRT-PCR confirmed differential expression in four of these genes (COL1A1, COL7A1, MMP7, and TLR6). Increased expression of MMP7 was the only consistent differentially regulated gene in the conjunctival samples of trichiasis subjects. MMP7 was present in isolated conjunctival proteins and in the tissue culture supernatants of peripheral blood lymphocytes after stimulation.

conclusionsThere is an imbalance in extracellular matrix turnover with minimal contribution of adaptive immune responses at this stage of trichiasis. There was little evidence of broad differential expression in genes characteristic of polar responses of adaptive T cells or macrophages. The control of the MMP7 response and its activity appears significant in the fibrotic changes observed in TT.

Indexed as

EyelashesOligonucleotide Array Sequence AnalysisAdultAgedAged, 80 and overConjunctival DiseasesDNA, MitochondrialElectrophoresis, Polyacrylamide GelEnzyme-Linked Immunosorbent AssayFemaleGambiaHair DiseasesHumansImmunoblottingMaleMatrix Metalloproteinase 7DNA, MitochondrialMatrix Metalloproteinase 7MMP7 protein, humanRNA, Messenger

Identifiers

PMID20375326
PMCPMC2910633
OpenAlexW2108409550

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.