Evidence map›Paper›PMID 20375175›Full record

ArticleJournal of virology2010

Human bocavirus capsid structure: insights into the structural repertoire of the parvoviridae.

Brittney L Gurda, Kristin N Parent, Heather Bladek, Robert S Sinkovits, Michael A DiMattia, Chelsea Rence, Alejandro Castro, Robert McKenna, Norm Olson, Kevin Brown and 2 more

Abstract read
In one paragraph

Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 89 citations in OpenAlex.

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  15. Identification and genomic characterization of bovine parvovirus 1 in yaks.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Brittney L GurdaDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, Florida 32610, USA.
Kristin N Parent
Heather Bladek
Robert S Sinkovits
Michael A DiMattia
Chelsea Rence
Alejandro Castro
Robert McKenna
Norm Olson
Kevin Brown
Timothy S Baker
Mavis Agbandje-McKenna
University of Florida · USUniversity of California, San Diego · US

Funding

VIRUS ASSEMBLY AND TRANSMISSIONP01AI045976 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI ROSSMANN, MICHAEL G · 1999 to 2008
$8.8M
Microscopy &Image Analysis of Unstained MacromoleculesR37GM033050 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAKER, TIMOTHY S · 2004 to 2013
$5.6M
TRANSMISSION ELECTRON MICROSCOPE: STRUCTURAL &CELL BIOL: MEMBRANE TRANSPORT, GAS10RR020016 · NCRR · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI BAKER, TIMOTHY S · 2004 to 2004
$2.0M
NCRR NIH HHS 1S10 RR020016NCRR NIH HHS S10 RR020016NIAID NIH HHS P01 AI045976NIAID NIH HHS R21 AI81072341NIGMS NIH HHS R37 GM033050NIGMS NIH HHS R37 GM-33050PHS HHS F32A1078624
6 · The paper itself

Abstract

Human bocavirus (HBoV) was recently discovered and classified in the Bocavirus genus (family Parvoviridae, subfamily Parvovirinae) on the basis of genomic similarity to bovine parvovirus and canine minute virus. HBoV has been implicated in respiratory tract infections and gastroenteric disease in children worldwide, yet despite numerous epidemiological reports, there has been limited biochemical and molecular characterization of the virus. Reported here is the three-dimensional structure of recombinant HBoV capsids, assembled from viral protein 2 (VP2), at 7.9-A resolution as determined by cryo-electron microscopy and image reconstruction. A pseudo-atomic model of HBoV VP2 was derived from sequence alignment analysis and knowledge of the crystal structure of human parvovirus B19 (genus Erythrovirus). Comparison of the HBoV capsid structure to that of parvoviruses from five separate genera demonstrates strong conservation of a beta-barrel core domain and an alpha-helix, from which emanate several loops of various lengths and conformations, yielding a unique surface topology that differs from the three already described for this family. The highly conserved core is consistent with observations for other single-stranded DNA viruses, and variable surface loops have been shown to confer the host-specific tropism and the diverse antigenic properties of this family.

Indexed as

CapsidCryoelectron MicroscopyHumansParvoviridaeProtein ConformationViral ProteinsViral Proteins

Identifiers

PMID20375175
PMCPMC2876641
OpenAlexW2171618820

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.