Evidence map›Paper›PMID 20371629›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2010

Zebrafish dead end possesses ATPase activity that is required for primordial germ cell development.

Weiyi Liu, Paul Collodi

Abstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 52 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Spinyhead Croaker Germ Cells GeneLife (Basel, Switzerland) · 2022
    Article
  10. Primordial Germ Cell Development in the Poeciliid,Frontiers in cell and developmental biology · 2022
    Article
  11. Animals : an open access journal from MDPI · 2021
    Article
  12. Review
  13. Dead-end (dnd) protein in fish-a review.Fish physiology and biochemistry · 2021
    Review
  14. Article
  15. Article
  16. Maternal Dead-end 1 promotes translation ofDevelopment (Cambridge, England) · 2017
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Weiyi LiuDepartment of Animal Sciences, Purdue University, 915 W. State Street, West Lafayette, Indiana 47907, USA.
Paul Collodi
Purdue University West Lafayette · US

Funding

Zebrafish ES cell lines for targeted mutagenesisR01GM069384 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI COLLODI, PAUL · 2003 to 2010
$2.6M
NIGMS NIH HHS R01 GM069384NIGMS NIH HHS R01GM069384
6 · The paper itself

Abstract

Zebrafish dead end (dnd) mRNA is specifically expressed in primordial germ cells (PGCs) and is required for PGC migration and survival. Previous studies have shown that zebrafish Dnd functions by protecting the 3'UTRs of nanos1 and TDRD7 from miR-430b-mediated RNA deadenylation. In this work, we demonstrate that zebrafish Dnd protein possesses Mg(2+)-dependent ATPase activity that is required for PGC formation. Michaelis-Menten analysis revealed that the ATPase has a k(cat) of 0.632 +/- 0.036/min under optimal conditions, and mapping studies using Dnd truncates showed that ATPase resides in the last 91 aa of the Dnd C terminus. Internal deletion and point mutagenesis analysis of this region were used to identify key amino acids required for ATPase activity. Rescue experiments conducted by injecting mRNAs encoding the Dnd ATPase mutants into embryos in which the endogenous dnd expression was inhibited demonstrated that the ATPase activity is required for normal zebrafish PGC survival. Real-time PCR analysis showed that the expression of PGC markers nanos1 and TDRD7 but not vasa were down-regulated when dnd mutant proteins lacking ATPase were expressed in the rescued embryos, indicating that the Dnd ATPase is involved in protecting nanos1 and TDRD7 transcripts.

Indexed as

Adenosine TriphosphatasesAmino AcidsAnimalsEmbryo, NonmammalianGerm CellsKineticsMutagenesisRibonucleoproteinsRNA-Binding ProteinsZebrafishZebrafish ProteinsAdenosine TriphosphatasesAmino Acidsdnd1 protein, zebrafishnanos3 protein, zebrafishRibonucleoproteinsRNA-Binding ProteinsZebrafish Proteins

Identifiers

PMID20371629
PMCPMC3230528
OpenAlexW2111553958

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.