Evidence map›Paper›PMID 20371332›Full record

ArticleBiophysical journal2010

Dynamics of biological macromolecules: not a simple slaving by hydration water.

S Khodadadi, J H Roh, A Kisliuk, E Mamontov, M Tyagi, S A Woodson, R M Briber, A P Sokolov

Abstract read
In one paragraph

Article in Biophysical journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Water Networks Repopulate Protein-Ligand Interfaces with Temperature.Angewandte Chemie (International ed. in English) · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Water in protein hydration and ligand recognition.Journal of molecular recognition : JMR · 2019
    Review
  15. Water-Polymer Coupling Induces a Dynamical Transition in Microgels.The journal of physical chemistry letters · 2019
    Article
  16. Entropic contribution to enhanced thermal stability in the thermostable P450 CYP119.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  17. Article
  18. Catalysts (Basel, Switzerland) · 2017
    Article
  19. Review
  20. Anomalously Rapid Hydration Water Diffusion Dynamics Near DNA Surfaces.Journal of the American Chemical Society · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

S KhodadadiDepartment of Polymer Science, University of Akron, Akron, Ohio, USA.
J H Roh
A Kisliuk
E Mamontov
M Tyagi
S A Woodson
R M Briber
A P Sokolov

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We studied the dynamics of hydrated tRNA using neutron and dielectric spectroscopy techniques. A comparison of our results with earlier data reveals that the dynamics of hydrated tRNA is slower and varies more strongly with temperature than the dynamics of hydrated proteins. At the same time, tRNA appears to have faster dynamics than DNA. We demonstrate that a similar difference appears in the dynamics of hydration water for these biomolecules. The results and analysis contradict the traditional view of slaved dynamics, which assumes that the dynamics of biological macromolecules just follows the dynamics of hydration water. Our results demonstrate that the dynamics of biological macromolecules and their hydration water depends strongly on the chemical and three-dimensional structures of the biomolecules. We conclude that the whole concept of slaving dynamics should be reconsidered, and that the mutual influence of biomolecules and their hydration water must be taken into account.

Indexed as

Macromolecular SubstancesAnimalsBiophysicsHydrogenHydrogen BondingMuramidaseMyoglobinNeutronsRNA, TransferScattering, RadiationTemperatureTriticumWaterHydrogenMacromolecular SubstancesMuramidaseMyoglobinRNA, TransferWater

Identifiers

PMID20371332
PMCPMC2849066

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.