Evidence map›Paper›PMID 20370717›Full record

ArticleThe Biochemical journal2010

A novel HPLC-based approach makes possible the spatial characterization of cellular PtdIns5P and other phosphoinositides.

Deborah Sarkes, Lucia E Rameh

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 124 citations in OpenAlex.

  1. Review
  2. Article
  3. Subcellular Cartography of the Phosphoinositide Multiverse.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2026
    Review
  4. Review
  5. Multimodal action of KRP203 on phosphoinositide kinases in vitro and in cells.Biochemical and biophysical research communications · 2023
    Article
  6. Review
  7. Article
  8. Article
  9. 25 Years of PI5P.Frontiers in cell and developmental biology · 2023
    Review
  10. PI(4,5)P2: signaling the plasma membrane.The Biochemical journal · 2022
    Article
  11. Article
  12. Article
  13. Pharmacological inhibition of PI5P4Kα/β disrupts cell energy metabolism and selectively kills p53-null tumor cells.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. The nuclear phosphoinositide response to stress.Cell cycle (Georgetown, Tex.) · 2020
    Review

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Deborah SarkesBoston Biomedical Research Institute, 64 Grove Street, Watertown, MA 02472, USA.
Lucia E Rameh
Boston Biomedical Research Institute · US

Funding

The Role of PtdIns-5-P in Cell Function and SignalingR01DK063219 · NIDDK · BOSTON MEDICAL CENTER · PI RAMEH-PLANT, LUCIA · 2003 to 2012
$4.0M
NIDDK NIH HHS R01 DK063219NIDDK NIH HHS R01-DK63219
6 · The paper itself

Abstract

PtdIns5P was discovered in 1997 [Rameh, Tolias, Duckworth and Cantley (1997) Nature 390, 192-196], but still very little is known about its regulation and function. Hitherto, studies of PtdIns5P regulation have been hindered by the inability to measure cellular PtdIns5P using conventional HPLC, owing to poor separation from PtdIns4P. In the present paper we describe a new HPLC method for resolving PtdIns5P from PtdIns4P, which makes possible accurate measurements of basal and inducible levels of cellular PtdIns5P in the context of other phosphoinositides. Using this new method, we found that PtdIns5P is constitutively present in all cells examined (epithelial cells, fibroblasts and myoblasts, among others) at levels typically 1-2% of PtdIns4P levels. In the beta-pancreatic cell line BTC6, which is specialized in insulin secretion, PtdIns5P levels were higher than in most cells (2.5-4% of PtdIns4P). Using subcellular fractionation, we found that the majority of the basal PtdIns5P is present in the plasma membrane, but it is also enriched in intracellular membrane compartments, especially in SER (smooth endoplasmic reticulum) and/or Golgi, where high levels of PtdIns3P were also detected. Unlike PtdIns3P, PtdIns5P was also found in fractions containing very-low-density vesicles. Knockdown of PIP4K (PtdIns5P 4-kinase) leads to accumulation of PtdIns5P in light fractions and fractions enriched in SER/Golgi, whereas treatment with Brefeldin A results in a subtle, but reproducible, change in PtdIns5P distribution. These results indicate that basal PtdIns5P and the PtdIns5P pathway for PtdIns(4,5)P(2) synthesis may play a role in Golgi-mediated vesicle trafficking.

Indexed as

AnimalsCell MembraneCells, CulturedCHO CellsChromatography, High Pressure LiquidCricetinaeCricetulusHeLa CellsHumansMiceNIH 3T3 CellsPhosphatidylinositol PhosphatesPhosphatidylinositolsphosphatidylinositol 5-phosphatePhosphatidylinositol PhosphatesPhosphatidylinositols

Identifiers

PMID20370717
PMCPMC2944655
OpenAlexW1975543728

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.