Evidence map›Paper›PMID 20368977›Full record

ArticlePLoS pathogens2010

A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence.

Tannistha Nandi, Catherine Ong, Arvind Pratap Singh, Justin Boddey, Timothy Atkins, Mitali Sarkar-Tyson, Angela E Essex-Lopresti, Hui Hoon Chua, Talima Pearson, Jason F Kreisberg and 13 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 150 citations in OpenAlex.

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  15. The Resistance and Virulence Characteristics ofInfection and drug resistance · 2023
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  19. A type IVB pilin influences twitching motility andMicrobiology (Reading, England) · 2022
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13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 5 countries.

Tannistha NandiGenome Institute of Singapore, Singapore, Republic of Singapore.
Catherine Ong
Arvind Pratap Singh
Justin Boddey
Timothy Atkins
Mitali Sarkar-Tyson
Angela E Essex-Lopresti
Hui Hoon Chua
Talima Pearson
Jason F Kreisberg
Christina Nilsson
Pramila Ariyaratne
Catherine Ronning
Liliana Losada
Yijun Ruan
Wing-Kin Sung
Donald Woods
Richard W Titball
Ifor Beacham
Ian Peak
Paul Keim
William C Nierman
Patrick Tan
Genome Institute of Singapore · SGDefence Science and Technology Laboratory · GBGriffith University · AUJ. Craig Venter Institute · USNorthern Arizona University · USDSO National Laboratories · SGHealth Sciences Centre · CAUniversity of Exeter · GB

Funding

NIAID NIH HHS N01 AI030071NIAID NIH HHS N01-AI30071
6 · The paper itself

Abstract

Certain environmental microorganisms can cause severe human infections, even in the absence of an obvious requirement for transition through an animal host for replication ("accidental virulence"). To understand this process, we compared eleven isolate genomes of Burkholderia pseudomallei (Bp), a tropical soil microbe and causative agent of the human and animal disease melioidosis. We found evidence for the existence of several new genes in the Bp reference genome, identifying 282 novel genes supported by at least two independent lines of supporting evidence (mRNA transcripts, database homologs, and presence of ribosomal binding sites) and 81 novel genes supported by all three lines. Within the Bp core genome, 211 genes exhibited significant levels of positive selection (4.5%), distributed across many cellular pathways including carbohydrate and secondary metabolism. Functional experiments revealed that certain positively selected genes might enhance mammalian virulence by interacting with host cellular pathways or utilizing host nutrients. Evolutionary modifications improving Bp environmental fitness may thus have indirectly facilitated the ability of Bp to colonize and survive in mammalian hosts. These findings improve our understanding of the pathogenesis of melioidosis, and establish Bp as a model system for studying the genetics of accidental virulence.

Indexed as

Biological EvolutionGenes, BacterialAnimalsBase SequenceBurkholderia pseudomalleiFemaleFluorescent Antibody TechniqueGene Expression ProfilingGenome, BacterialMelioidosisMiceMice, Inbred BALB CMolecular Sequence DataVirulence

Identifiers

PMID20368977
PMCPMC2848565
OpenAlexW2152831346

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.