Evidence map›Paper›PMID 20368425›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Legionella pneumophila 6S RNA optimizes intracellular multiplication.

Sébastien P Faucher, Gilgi Friedlander, Jonathan Livny, Hanah Margalit, Howard A Shuman

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 89 citations in OpenAlex.

  1. Bacterial small regulatory RNAs.Nature reviews. Microbiology · 2026
    Review
  2. Article
  3. Small molecule communication ofMicrobiology and molecular biology reviews : MMBR · 2024
    Review
  4. Article
  5. Involvement ofInternational journal of molecular sciences · 2022
    Article
  6. Prokaryotic ncRNAs: Master regulators of gene expression.Current research in pharmacology and drug discovery · 2022
    Article
  7. Ms1 RNA Interacts With the RNA Polymerase Core inFrontiers in microbiology · 2022
    Article
  8. Article
  9. Article
  10. Gene Regulation and Transcriptomics.Current issues in molecular biology · 2021
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Sébastien P FaucherDepartment of Microbiology and Immunology, Columbia University Medical Center, New York, NY 10032, USA.
Gilgi Friedlander
Jonathan Livny
Hanah Margalit
Howard A Shuman
Columbia University Irving Medical Center · USHebrew University of Jerusalem · ILBrigham and Women's Hospital · US

Funding

Gene Expression Patterns and Lifestyles in LegionellaR01AI064481 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHUMAN, HOWARD A · 2005 to 2009
$3.1M
NIAID NIH HHS AI064481NIAID NIH HHS R01 AI064481
6 · The paper itself

Abstract

Legionella pneumophila is a Gram-negative opportunistic human pathogen that infects and multiplies in a broad range of phagocytic protozoan and mammalian phagocytes. Based on the observation that small regulatory RNAs (sRNAs) play an important role in controlling virulence-related genes in several pathogenic bacteria, we attempted to identify sRNAs expressed by L. pneumophila. We used computational prediction followed by experimental verification to identify and characterize sRNAs encoded in the L. pneumophila genome. A 50-mer probe microarray was constructed to test the expression of predicted sRNAs in bacteria grown under a variety of conditions. This strategy successfully identified 22 expressed RNAs, out of which 6 were confirmed by northern blot and RACE. One of the identified sRNAs is highly expressed in postexponential phase, and computational prediction of its secondary structure reveals a striking similarity to the structure of 6S RNA, a widely distributed prokaryotic sRNA, known to regulate the activity of sigma(70)-containing RNA polymerase. A 70-mer probe microarray was used to identify genes affected by L. pneumophila 6S RNA in stationary phase. The 6S RNA positively regulates expression of genes encoding type IVB secretion system effectors, stress response genes such as groES and recA, as well as many genes involved in acquisition of nutrients and genes with unknown or hypothetical functions. Deletion of 6S RNA significantly reduced L. pneumophila intracellular multiplication in both protist and mammalian host cells, but had no detectable effect on growth in rich media.

Indexed as

AlgorithmsBacterial ProteinsGene DeletionGene Expression Regulation, BacterialGenes, BacterialLegionella pneumophilaModels, BiologicalModels, GeneticMutationNucleic Acid HybridizationOligonucleotide Array Sequence AnalysisRNA, BacterialRNA, UntranslatedTranscription, GeneticVirulenceVirulence Factors6S RNABacterial ProteinsRNA, BacterialRNA, UntranslatedVirulence Factors

Identifiers

PMID20368425
PMCPMC2867745
OpenAlexW2092514439

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.