Evidence map›Paper›PMID 20368341›Full record

ArticleGenome research2010

Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities.

Yassina Bechah, Khalid El Karkouri, Oleg Mediannikov, Quentin Leroy, Nicolas Pelletier, Catherine Robert, Claudine Médigue, Jean-Louis Mege, Didier Raoult

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 67 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Genetic typing of isolates of Rickettsia typhi.PLoS neglected tropical diseases · 2022
    Article
  5. New approaches in the systematics of rickettsiae.New microbes and new infections · 2018
    Article
  6. Comparative Transcriptome Profiling of Virulent and AttenuatedFrontiers in cellular and infection microbiology · 2018
    Article
  7. Article
  8. Article
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  11. Rickettsia buchneri sp. nov., a rickettsial endosymbiont of the blacklegged tick Ixodes scapularis.International journal of systematic and evolutionary microbiology · 2015
    Article
  12. Article
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  18. Hemocytes from Pediculus humanus humanus are hosts for human bacterial pathogens.Frontiers in cellular and infection microbiology · 2014
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Yassina BechahUnit for Research on Emergent and Tropical Infectious Diseases (URMITE), Faculty of Medicine, Centre National de la Recherche Scientifique-Institut de Recherche pour le Développement, University of the Mediterranean, 13005 Marseille, France.
Khalid El Karkouri
Oleg Mediannikov
Quentin Leroy
Nicolas Pelletier
Catherine Robert
Claudine Médigue
Jean-Louis Mege
Didier Raoult
Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes · FRGénomique Métabolique du Genoscope · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rickettsia prowazekii, the agent of epidemic typhus, is an obligate intracellular bacterium that is transmitted to human beings by the body louse. Several strains that differ considerably in virulence are recognized, but the genetic basis for these variations has remained unknown since the initial description of the avirulent vaccine strain nearly 70 yr ago. We use a recently developed murine model of epidemic typhus and transcriptomic, proteomic, and genetic techniques to identify the factors associated with virulence. We identified four phenotypes of R. prowazekii that differed in virulence, associated with the up-regulation of antiapoptotic genes or the interferon I pathway in the host cells. Transcriptional and proteomic analyses of R. prowazekii surface protein expression and protein methylation varied with virulence. By sequencing a virulent strain and using comparative genomics, we found hotspots of mutations in homopolymeric tracts of poly(A) and poly(T) in eight genes in an avirulent strain that split and inactivated these genes. These included recO, putative methyltransferase, and exported protein. Passage of the avirulent Madrid E strain in cells or in experimental animals was associated with a cascade of gene reactivations, beginning with recO, that restored the virulent phenotype. An area of genomic plasticity appears to determine virulence in R. prowazekii and represents an example of adaptive mutation for this pathogen.

Indexed as

Gene Expression ProfilingGenomicsMutationProteomicsAdaptation, PhysiologicalAmino Acid SequenceAnimalsBacterial ProteinsBase SequenceDisease Models, AnimalEndothelial CellsGene Expression RegulationGene Expression Regulation, BacterialGuinea PigsHumansL CellsBacterial ProteinsProteins

Identifiers

PMID20368341
PMCPMC2860167
OpenAlexW2003951133

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.