Evidence map›Paper›PMID 20368288›Full record

ArticleMolecular & cellular proteomics : MCP2010

A bimodal distribution of two distinct categories of intrinsically disordered structures with separate functions in FG nucleoporins.

Justin Yamada, Joshua L Phillips, Samir Patel, Gabriel Goldfien, Alison Calestagne-Morelli, Hans Huang, Ryan Reza, Justin Acheson, Viswanathan V Krishnan, Shawn Newsam and 5 more

Abstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 197 papers.

0numbers the graph read from it
0cells of the map it votes in
197citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

197 citing papers in PubMed.

  1. Article
  2. Structure, function and assembly of nuclear pore complexes.Nature reviews. Molecular cell biology · 2026
    Review
  3. Article
  4. Article
  5. Integrative mapping reveals molecular features underlying the mechanism of nucleocytoplasmic transport.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

137 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Justin YamadaDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, California 95064, USA.
Joshua L Phillips
Samir Patel
Gabriel Goldfien
Alison Calestagne-Morelli
Hans Huang
Ryan Reza
Justin Acheson
Viswanathan V Krishnan
Shawn Newsam
Ajay Gopinathan
Edmond Y Lau
Michael E Colvin
Vladimir N Uversky
Michael F Rexach

Funding

Architecture of the Diffusion Barrier in the Nuclear Pore ComplexR01GM077520 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI REXACH, MICHAEL F · 2007 to 2010
$1.3M
Bioinformatics linkage of protein disorder and functionR01LM007688 · NLM · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DUNKER, ALAN KEITH · 2003 to 2006
$1.3M
Mining the Structural Genomics Initiative for DisorderR01GM071714 · NIGMS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DUNKER, ALAN KEITH · 2006 to 2009
$1.1M
NIGMS NIH HHS GM071714NIGMS NIH HHS R01 GM071714NIGMS NIH HHS R01 GM077520NLM NIH HHS R01 LM007688
6 · The paper itself

Abstract

Nuclear pore complexes (NPCs) gate the only conduits for nucleocytoplasmic transport in eukaryotes. Their gate is formed by nucleoporins containing large intrinsically disordered domains with multiple phenylalanine-glycine repeats (FG domains). In combination, these are hypothesized to form a structurally and chemically homogeneous network of random coils at the NPC center, which sorts macromolecules by size and hydrophobicity. Instead, we found that FG domains are structurally and chemically heterogeneous. They adopt distinct categories of intrinsically disordered structures in non-random distributions. Some adopt globular, collapsed coil configurations and are characterized by a low charge content. Others are highly charged and adopt more dynamic, extended coil conformations. Interestingly, several FG nucleoporins feature both types of structures in a bimodal distribution along their polypeptide chain. This distribution functionally correlates with the attractive or repulsive character of their interactions with collapsed coil FG domains displaying cohesion toward one another and extended coil FG domains displaying repulsion. Topologically, these bipartite FG domains may resemble sticky molten globules connected to the tip of relaxed or extended coils. Within the NPC, the crowding of FG nucleoporins and the segregation of their disordered structures based on their topology, dimensions, and cohesive character could force the FG domains to form a tubular gate structure or transporter at the NPC center featuring two separate zones of traffic with distinct physicochemical properties.

Indexed as

Amino Acid SequenceElectrophoresis, Polyacrylamide GelGlycineMolecular Sequence DataNuclear Pore Complex ProteinsPhenylalanineProtein ConformationSequence Homology, Amino AcidGlycineNuclear Pore Complex ProteinsPhenylalanine

Identifiers

PMID20368288
PMCPMC2953916

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.