Evidence map›Paper›PMID 20367240›Full record

ArticleJournal of neurovirology2010

Human immunodeficiency virus-1 evolutionary patterns associated with pathogenic processes in the brain.

Susanna L Lamers, Marco Salemi, Derek C Galligan, Alanna Morris, Rebecca Gray, Gary Fogel, Li Zhao, Michael S McGrath

Open access · greenAbstract read
In one paragraph

Article in Journal of neurovirology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Substance abuse and neurotransmission.Advances in pharmacology (San Diego, Calif.) · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. [The Journal of pharmacology and experimental therapeutics · 2020
    Article
  10. Microglial Cells: The Main HIV-1 Reservoir in the Brain.Frontiers in cellular and infection microbiology · 2019
    Review
  11. Review
  12. The role of human dopamine transporter in NeuroAIDS.Pharmacology & therapeutics · 2018
    Review
  13. Article
  14. Predicted coreceptor usage at end-stage HIV disease in tissues derived from subjects on antiretroviral therapy with an undetectable plasma viral load.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2017
    Article
  15. Article
  16. Electro-Magnetic Nano-Particle Bound Beclin1 siRNA Crosses the Blood-Brain Barrier to Attenuate the Inflammatory Effects of HIV-1 Infection in Vitro.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2017
    Article
  17. Article
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  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Susanna L LamersBioInfoExperts, Thibodaux, Louisiana, USA.
Marco Salemi
Derek C Galligan
Alanna Morris
Rebecca Gray
Gary Fogel
Li Zhao
Michael S McGrath
University of California, San Francisco · USUniversity of Florida · USNatural Selection (United States) · USShandong University · CN

Funding

West Coast AIDS and Cancer Specimen Resource (ACSR)U01CA066529 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCGRATH, MICHAEL SHANNON · 1994 to 2012
$16.1M
Viral evolution in peropheral macrophages and brain during progression to AIDSR01NS063897 · NINDS · UNIVERSITY OF FLORIDA · PI SALEMI, MARCO · 2009 to 2021
$7.0M
HIV-1 VARIANTS WITHIN PBMC SUBPOPULATIONS IN INFANTSR01HD032259 · NICHD · UNIVERSITY OF FLORIDA · PI GOODENOW, MAUREEN M · 1995 to 2007
$2.8M
Role of HIV-1 Env Diversity in Cellular TropismR01AI065265 · NIAID · UNIVERSITY OF FLORIDA · PI GOODENOW, MAUREEN M · 2005 to 2009
$2.1M
HIV Sequence Evolution in AIDS Dementia PathogenesisR01MH073510 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCGRATH, MICHAEL SHANNON · 2005 to 2009
$1.5M
HIV 1 VARIANTS WITHIN PBMC SUBPOPULATIONS IN INFANTSR55HD032259 · NICHD · UNIVERSITY OF FLORIDA · PI GOODENOW, MAUREEN M · 1994 to 1994
–
NCI NIH HHS U01 CA066529NCI NIH HHS U01 CA066529-12NIAID NIH HHS AI065265NIAID NIH HHS R01 AI065265NICHD NIH HHS HD32259NICHD NIH HHS R01 HD032259NIMH NIH HHS R01 MH073510NINDS NIH HHS R01 NS063897
6 · The paper itself

Abstract

The interplay between pathology and human immunodeficiency virus (HIV) expansion in brain tissues has not been thoroughly assessed in the highly active antiretroviral therapy (HAART) era. HIV-associated dementia (HAD) is marked by progressive brain infection due to recruitment and migration of macrophages in brain tissues; however, the cellular and viral events occurring prior to HAD development and death are under debate. In this study, 66 brain tissues from 11 autopsies were analyzed to assess HIV-1 DNA concentration in brain tissues. In most patients without HAD, it was impossible to amplify HIV-1 from brain tissues. Amplifiable DNA was obtained from three cases of patients on HAART who died due to primary pathology other than HAD: (1) cardiovascular disease, a disease associated with HAART therapy; (2) bacterial infections, including Mycobacterium avium complex, rapid occurrence of extreme dementia; and (3) acquired immunodeficiency syndrome (AIDS)-related lymphoma with meningeal involvement. HIV-1 DNA was also amplified from multiple tissues of two HAD patients. Analysis of HIV-1 nef, gp120, and gp41 sequences showed reduced viral evolution within brain tissues for the non-HAD cases relative to patients with clinical and histological HAD. The present study is the first to show a potential correlation between HIV-1 evolutionary patterns in the brain and different neuropathologies.

Indexed as

Evolution, MolecularAIDS Dementia ComplexAmino Acid SequenceAntigens, CDAntigens, Differentiation, MyelomonocyticAntiretroviral Therapy, Highly ActiveAtherosclerosisBayes TheoremBrainCD68 MoleculeConsensus SequenceDisease ProgressionHIV-1HIV Core Protein p24HIV Envelope Protein gp120HIV Envelope Protein gp41Antigens, CDAntigens, Differentiation, MyelomonocyticCD68 antigen, humanCD68 Moleculegp120 protein, Human immunodeficiency virus 1HIV Core Protein p24HIV Envelope Protein gp120HIV Envelope Protein gp41Human Immunodeficiency Virus Proteinsnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1p24 protein, Human Immunodeficiency Virus Type 1

Identifiers

PMID20367240
PMCPMC2994721
OpenAlexW2100647507

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.