Evidence map›Paper›PMID 20363936›Full record

ArticleJournal of bacteriology2010

Direct targets of CodY in Staphylococcus aureus.

Charlotte D Majerczyk, Paul M Dunman, Thanh T Luong, Chia Y Lee, Marat R Sadykov, Greg A Somerville, Kip Bodi, Abraham L Sonenshein

Erratum issuedAbstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 151 papers.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed
8.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed, 211 citations in OpenAlex.

  1. InJournal of bacteriology · 2026
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  5. InbioRxiv : the preprint server for biology · 2026
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  12. Loratadine decreases virulence of methicillin-resistantbioRxiv : the preprint server for biology · 2025
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  18. Loratadine Combats Methicillin-ResistantACS infectious diseases · 2024
    Article
  19. Article
  20. Article

91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Charlotte D MajerczykDepartment of Molecular Biology and Microbiology, Sackler School of Graduate Biomedical Sciences, Tufts University, Boston, MA 02111, USA.
Paul M Dunman
Thanh T Luong
Chia Y Lee
Marat R Sadykov
Greg A Somerville
Kip Bodi
Abraham L Sonenshein
Tufts University · USUniversity of Arkansas for Medical Sciences · USUniversity of Nebraska–Lincoln · USUniversity of Nebraska Medical Center · US

Funding

ISOLATION OF EARLY SPORULATION GENESR01GM042219 · NIGMS · TUFTS UNIVERSITY BOSTON · PI SONENSHEIN, ABRAHAM LINCOLN · 1989 to 2015
$5.8M
TYPE 8 CAPSULE OF STAPHYLOCOCCUS AUREUSR01AI037027 · NIAID · UNIV OF ARKANSAS FOR MED SCIS · PI LEE, CHIA Y. · 1995 to 2013
$3.2M
NIAID NIH HHS AI037027NIAID NIH HHS R01 AI037027NIGMS NIH HHS GM042219NIGMS NIH HHS R01 GM042219
6 · The paper itself

Abstract

More than 200 direct CodY target genes in Staphylococcus aureus were identified by genome-wide analysis of in vitro DNA binding. This analysis, which was confirmed for some genes by DNase I footprinting assays, revealed that CodY is a direct regulator of numerous transcription units associated with amino acid biosynthesis, transport of macromolecules, and virulence. The virulence genes regulated by CodY fell into three groups. One group was dependent on the Agr system for its expression; these genes were indirectly regulated by CodY through its repression of the agr locus. A second group was regulated directly by CodY. The third group, which includes genes for alpha-toxin and capsule synthesis, was regulated by CodY in two ways, i.e., by direct repression and by repression of the agr locus. Since S. aureus CodY was activated in vitro by the branched chain amino acids and GTP, CodY appears to link changes in intracellular metabolite pools with the induction of numerous adaptive responses, including virulence.

Indexed as

Bacterial ProteinsBinding SitesDNA FootprintingElectrophoretic Mobility Shift AssayGene Expression Regulation, BacterialModels, BiologicalOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticProtein BindingRegulonRepressor ProteinsReverse Transcriptase Polymerase Chain ReactionStaphylococcus aureusTrans-ActivatorsVirulenceAgr protein, Staphylococcus aureusBacterial ProteinsCodY protein, Staphylococcus aureusRepressor ProteinsSarA protein, Staphylococcus aureusTrans-Activators

Identifiers

PMID20363936
PMCPMC2876493
OpenAlexW2155568318

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.